PFRMAT RR
TARGET T0262
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MPSSSQYRRYQDPHHPSIPTPTTLFSQPSLEILGGGVAEELPELALCCDG
TVVEGRSNCRCKARAVLPGGMRVRLSKTLAGILRHHPGRYGVRLTREGWA
RVSEVVEGLRKAGWSWVEEWHIVGVALHDPKGRYELRNGEIRARYGHSIP
VNVEPLPGEPPPILYHGTTEEALPLIMERGIMRGRRLKVHLTSSLEDAVS
TGRRHGNLVAVLLVDVECLRRRGLKVERMSKTVYTVDWVPPECIAEVRRE
SLGRSL
82 213 0 8 0.3332
166 186 0 8 0.3213
145 231 0 8 0.31875
191 214 0 8 0.3043
145 188 0 8 0.3026
145 229 0 8 0.2975
78 101 0 8 0.28815
102 136 0 8 0.28645
156 228 0 8 0.2703
175 228 0 8 0.24905
172 200 0 8 0.24225
126 210 0 8 0.238
188 229 0 8 0.23205
78 209 0 8 0.2261
114 153 0 8 0.22185
73 228 0 8 0.21675
169 216 0 8 0.20485
165 214 0 8 0.20315
110 228 0 8 0.20315
67 145 0 8 0.20145
156 175 0 8 0.1955
118 231 0 8 0.1853
182 238 0 8 0.1819
END