CreatePredAlphaCost pred_alpha2k alpha11 T0262.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0262.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 5 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 30  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

# from T0262.t2k.dssp-ehl2.constraints
HelixConstraint 	K77	R84	0.6209
HelixConstraint 	P87	R89	0.6728
HelixConstraint 	V102	K111	0.6628
HelixConstraint 	E119	L127	0.7678
HelixConstraint 	E170	E178	0.7044
HelixConstraint 	L195	A198	0.7703
StrandConstraint	Y134	L136	0.8002
#StrandConstraint	E140	R144	0.6218
#StrandConstraint	I163	Y165	0.6557
#StrandConstraint	K188	L191	0.6197

# from try1-opt2
SheetConstraint G98 R101	N138 E135	hbond A100  8.0
SheetConstraint P150 N152	K188 R186	hbond V151  8.0

# get the conserved histidines together
Constraint H85.NE2  H147.NE2	3.0  4.0  5.0	1.8
Constraint H85.NE2  H166.NE2	3.0  4.0  5.0	1.8
Constraint H85.NE2  H190.NE2	3.0  4.0  5.0	1.8
Constraint H147.NE2 H166.NE2	3.0  4.0  5.0	1.8
Constraint H147.NE2 H190.NE2	3.0  4.0  5.0	1.8
Constraint H166.NE2 H190.NE2	3.0  4.0  5.0	1.8