CreatePredAlphaCost pred_alpha2k alpha11 T0262.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0262.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 5 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 30  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

# from T0262.t2k.dssp-ehl2.constraints
HelixConstraint 	K77	R84	0.6209
HelixConstraint 	P87	R89	0.6728
HelixConstraint 	V102	K111	0.6628
HelixConstraint 	E119	L127	0.7678
HelixConstraint 	E170	E178	0.7044
HelixConstraint 	L195	A198	0.7703
StrandConstraint	Y134	L136	0.8002
#StrandConstraint	E140	R144	0.6218
#StrandConstraint	I163	Y165	0.6557
#StrandConstraint	K188	L191	0.6197

# from try1-opt2
SheetConstraint G98 R101	N138 E135	hbond A100  8.0
SheetConstraint P150 N152	K188 R186	hbond V151  8.0