# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1top 162 3.85e-03 1ncx a.39.1.5 17223 2sas 185 8.09e-02 2sas a.39.1.5 17258 1s29A 92 1.66e-01 unknown_sccs -315 1k4iA 233 2.38e-01 d.115.1.2 72056 1kgdA 180 2.41e-01 c.37.1.1 68582 1qjtA 99 4.82e-01 1eh2 a.39.1.6 17335 1aerA 205 6.43e-01 1aerA d.166.1.1 42249 1uesA 191 6.60e-01 1on2A 142 1.01e+00 a.4.5.24 87103 a.76.1.1 87104 1ggzA 148 1.17e+00 a.39.1.5 70176 1nt4A 391 1.44e+00 c.60.1.2 -7942 3ladA 476 1.81e+00 1lvl c.3.1.5 30573 c.3.1.5 30574 d.87.1.1 40208 1upiA 225 1.89e+00 b.82.1.1 -4823 1v8dA 235 1.90e+00 1nhkL 144 2.26e+00 1npk d.58.6.1 39142 1dqeA 137 2.58e+00 1dqeA a.39.2.1 17388 7taa 478 2.66e+00 7taa b.71.1.1 27778 c.1.8.1 28765 1ig5A 75 3.27e+00 4icb a.39.1.1 62363 1qnnA 191 3.31e+00 1avmA a.2.11.1 15792 d.44.1.1 38755 1s3jA 155 3.32e+00 a.4.5.28 -227 1i2aA 219 3.54e+00 e.24.1.1 -12012 1i60A 278 4.57e+00 c.1.15.4 71118 1v25A 541 4.65e+00 1pixA 587 4.65e+00 c.14.1.4 -6282 1m2xA 223 4.83e+00 d.157.1.1 84764 1ri5A 298 4.99e+00 unknown_sccs -8063 1g4yR 148 5.06e+00 1cll a.39.1.5 60252 4icb 76 5.42e+00 4icb a.39.1.1 17145 5pal 109 5.71e+00 1a75A a.39.1.4 17215 1auiB 169 5.97e+00 1auiB a.39.1.5 17325 1g57A 217 6.28e+00 1g57A d.115.1.2 60253 1f5jA 199 6.77e+00 1axkA b.29.1.11 24342 1nmeA 146 7.36e+00 c.17.1.1 85874 1avsA 90 7.68e+00 1cll a.39.1.5 17226 1ct5A 256 8.02e+00 1ct5A c.1.6.2 28663 1wdcC 156 8.05e+00 1wdcC a.39.1.5 17317 1e8aA 91 8.23e+00 1b4cA a.39.1.2 17188 1g2iA 166 8.36e+00 1g2iA c.23.16.2 31438 1eq9A 222 8.41e+00 5ptp b.47.1.2 26068 1opc 110 8.46e+00 1opc a.4.6.1 16231 1s6cA 183 8.63e+00 a.39.1.5 -858 1pvaA 110 8.63e+00 1a75A a.39.1.4 17207 3grs 478 8.87e+00 3grs c.3.1.5 30441 c.3.1.5 30442 d.87.1.1 40152 1efyA 350 9.11e+00 1a26 a.41.1.1 17413 d.166.1.2 42275 1uslA 170 9.24e+00 c.121.1.1 -6682 1n25A 368 9.31e+00 c.37.1.20 85264 1qtnA 164 9.64e+00 1pauA c.17.1.1 30999 1rro 108 1.07e+01 1a75A a.39.1.4 17195 1qx2A 76 1.07e+01 1kqfA 1015 1.09e+01 b.52.2.2 72871 c.81.1.1 72872 1gesA 450 1.15e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1rwyA 109 1.21e+01 a.39.1.4 -825 1lkoA 191 1.24e+01 a.25.1.1 78063 g.41.5.1 78064 1lf6A 684 1.25e+01 a.102.1.5 77918 b.30.5.5 77919 2pvbA 107 1.32e+01 1a75A a.39.1.4 17205 1aozA 552 1.32e+01 1aozA b.6.1.3 23124 b.6.1.3 23125 b.6.1.3 23126 1f4qA 165 1.35e+01 1alvA a.39.1.8 17360 1m7jA 484 1.36e+01 b.92.1.6 78732 b.92.1.6 78733 c.1.9.11 78734 1rk6A 496 1.37e+01 b.92.1.6 -5087 b.92.1.6 -5088 c.1.9.11 -5435 1k94A 165 1.44e+01 a.39.1.8 68333 1i1nA 226 1.46e+01 c.66.1.7 71102 1qtrA 317 1.46e+01 1qtrA c.69.1.7 34660 1k6dA 220 1.54e+01 unknown_sccs 72082 1ryt 190 1.55e+01 1ryt a.25.1.1 16646 g.41.5.1 45245 1uf5A 303 1.57e+01 1b71A 191 1.60e+01 1ryt a.25.1.1 16647 g.41.5.1 45246 4cpv 109 1.68e+01 1a75A a.39.1.4 17198 1eg5A 384 1.70e+01 1ecxA c.67.1.3 34429 1j1iA 296 1.71e+01 c.69.1.10 83977 1wm1A 317 1.84e+01 1exrA 148 1.86e+01 1cll a.39.1.5 17299 1h4gA 207 1.87e+01 b.29.1.11 70863 1el4A 195 1.95e+01 1ej3A a.39.1.5 59453 1bg4 302 1.95e+01 1taxA c.1.8.3 28806 1xyn 178 2.00e+01 1axkA b.29.1.11 24322 1jf2A 195 2.03e+01 1ej3A a.39.1.5 62930 1vjlA 164 2.04e+01 unknown_sccs -11117 1czaN 917 2.05e+01 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 1g8iA 190 2.09e+01 1rec a.39.1.5 60363 1vjpA 394 2.11e+01 c.2.1.3 -5897 d.81.1.3 -10480 1kexA 155 2.11e+01 b.18.1.2 77350 1mu5A 471 2.13e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1f7cA 231 2.24e+01 1f7cA a.116.1.1 19107 1rvkA 382 2.29e+01 c.1.11.2 -5568 d.54.1.1 -9826 1s96A 219 2.60e+01 c.37.1.1 -6972 1t0yA 122 2.62e+01 d.15.1.1 -9151 1uisA 231 2.65e+01 d.22.1.1 -9450 1kg0C 136 2.67e+01 d.169.1.1 72445 1f4sP 65 2.67e+01 g.38.1.1 64984 1lla 628 2.68e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.18.3 21861 1erzA 303 2.69e+01 1erzA d.160.1.2 59498 1qv1A 195 2.73e+01 a.39.1.5 -830 1j1uA 306 2.74e+01 c.26.1.1 83980 1itcA 516 2.76e+01 b.3.1.1 83705 c.1.8.1 83706 1gydB 315 2.79e+01 b.67.2.1 70751 1dfmA 223 2.84e+01 1d2iA c.52.1.5 33295 1sedA 117 2.85e+01 1vheA 373 2.90e+01 unknown_sccs -4280 c.56.5.4 -7890 2olbA 517 2.91e+01 1jevA c.94.1.1 35721 1bk1 184 2.92e+01 1axkA b.29.1.11 24340 1p57B 255 2.93e+01 b.47.1.2 -4248 1f0lA 535 3.00e+01 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 1jjeA 222 3.03e+01 1a7tA d.157.1.1 63117 1g3mA 294 3.13e+01 c.37.1.5 83268 1uasA 362 3.18e+01 b.71.1.1 88388 c.1.8.1 88389 1ly1A 181 3.19e+01 c.37.1.1 74334 1kl9A 182 3.26e+01 b.40.4.5 72681 1sra 151 3.37e+01 1sra a.39.1.3 17190 1mgtA 174 3.44e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1qh7A 207 3.50e+01 1axkA b.29.1.11 24317 1vkmA 297 3.50e+01 1dhr 241 3.56e+01 1dhr c.2.1.2 29832 1g8mA 593 3.58e+01 1g8mA c.24.1.3 60371 c.97.2.1 60372 1jetA 517 3.86e+01 1jevA c.94.1.1 35718 1k77A 260 3.87e+01 c.1.15.5 72096 1vns 609 3.90e+01 1vns a.111.1.3 19061 1npiA 61 3.99e+01 g.3.7.1 80685 1f46A 140 4.00e+01 1f46A d.129.4.1 59643 3dni 260 4.00e+01 3dni d.151.1.1 41791