# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1top 162 9.98e-02 1ncx a.39.1.5 17223 1s29A 92 4.12e-01 unknown_sccs -315 2sas 185 4.57e-01 2sas a.39.1.5 17258 1e0cA 271 1.43e+00 1e0cA c.46.1.2 32717 c.46.1.2 32718 1cbf 285 2.64e+00 1cbf c.90.1.1 35587 1efyA 350 3.10e+00 1a26 a.41.1.1 17413 d.166.1.2 42275 1ggzA 148 3.28e+00 a.39.1.5 70176 1wdcC 156 3.30e+00 1wdcC a.39.1.5 17317 1auiB 169 3.34e+00 1auiB a.39.1.5 17325 1gnlA 544 4.13e+00 e.26.1.1 70287 1n25A 368 4.72e+00 c.37.1.20 85264 1p9kA 79 4.83e+00 unknown_sccs -10238 1aerA 205 4.86e+00 1aerA d.166.1.1 42249 1j9lA 247 5.63e+00 c.106.1.1 62762 1k4iA 233 5.74e+00 d.115.1.2 72056 1k94A 165 6.91e+00 a.39.1.8 68333 1f4qA 165 7.60e+00 1alvA a.39.1.8 17360 1lam 484 7.70e+00 1lam c.56.5.3 33829 c.50.1.1 33166 1on2A 142 8.85e+00 a.4.5.24 87103 a.76.1.1 87104 1dt9A 437 8.99e+00 1dt9A c.55.4.2 33738 d.79.3.2 39815 d.91.1.1 40257 1oi7A 288 9.10e+00 c.2.1.8 87049 c.23.4.1 87050 1sgoA 139 9.18e+00 unknown_sccs -10487 1qtrA 317 9.24e+00 1qtrA c.69.1.7 34660 1nxiA 132 1.07e+01 d.58.47.1 86381 1cr5A 189 1.11e+01 1cr5A b.52.2.3 26931 d.31.1.1 38465 1mkmA 249 1.11e+01 a.4.5.33 79242 d.110.2.2 79243 1bmqB 88 1.12e+01 1pauB 1kk8B 139 1.15e+01 a.39.1.5 77430 1iybA 208 1.31e+01 d.124.1.1 -10977 1wm1A 317 1.32e+01 1sc3B 88 1.32e+01 2polA 366 1.35e+01 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1nt4A 391 1.37e+01 c.60.1.2 -7942 1g57A 217 1.39e+01 1g57A d.115.1.2 60253 1wdnA 226 1.59e+01 1lst c.94.1.1 35816 1v5sA 126 1.62e+01 2pvbA 107 1.64e+01 1a75A a.39.1.4 17205 1ef1A 294 1.68e+01 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 1a4iA 301 1.69e+01 1a4iA c.2.1.7 30278 c.58.1.2 33926 1dfmA 223 1.73e+01 1d2iA c.52.1.5 33295 1g8iA 190 1.74e+01 1rec a.39.1.5 60363 1n0wA 243 1.76e+01 c.37.1.11 79772 1j3wA 163 1.87e+01 unknown_sccs -10870 1s6cA 183 1.91e+01 a.39.1.5 -858 1gggA 226 1.92e+01 1lst c.94.1.1 35817 2cb5A 453 1.95e+01 3gcb d.3.1.1 37035 1m45A 148 2.04e+01 a.39.1.5 78598 3cla 213 2.12e+01 3cla c.43.1.1 32610 1ok7A 366 2.15e+01 1mmiA 366 2.16e+01 d.131.1.1 -11093 d.131.1.1 -11094 d.131.1.1 -11095 1nhkL 144 2.20e+01 1npk d.58.6.1 39142 1knwA 425 2.20e+01 b.49.2.3 -4274 c.1.6.1 -5229 1q0uA 219 2.24e+01 c.37.1.19 -7205 1mdc 133 2.25e+01 1hmt b.60.1.2 27198 1f6yA 262 2.30e+01 1f6yA c.1.21.2 29673 1nowA 507 2.32e+01 c.1.8.6 85936 d.92.2.1 85937 1m2xA 223 2.42e+01 d.157.1.1 84764 1qwtA 255 2.46e+01 unknown_sccs -3329 1rwyA 109 2.51e+01 a.39.1.4 -825 1g4yR 148 2.63e+01 1cll a.39.1.5 60252 1q9jA 422 2.64e+01 1n0xL 215 2.73e+01 b.1.1.1 -2063 b.1.1.2 -2429 1b5fA 239 2.73e+01 1smrA b.50.1.2 26836 1dqeA 137 2.82e+01 1dqeA a.39.2.1 17388 1eg5A 384 2.86e+01 1ecxA c.67.1.3 34429 1czaN 917 3.00e+01 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 1nbwB 117 3.10e+01 c.51.3.2 80396 1v9wA 130 3.17e+01 1ilr1 152 3.18e+01 1irp 1k9uA 78 3.40e+01 a.39.1.10 84348 1g7fA 298 3.48e+01 1pty c.45.1.2 60330 4cpv 109 3.51e+01 1a75A a.39.1.4 17198 1j1uA 306 3.51e+01 c.26.1.1 83980 1pylA 97 3.56e+01 1wdcB 156 3.62e+01 1wdcB a.39.1.5 17302 1nmeB 92 3.77e+01 1ec7A 446 3.79e+01 1bqg c.1.11.2 29218 d.54.1.1 38862 1paz 123 3.86e+01 1bqk b.6.1.1 22878 1vk1A 242 3.93e+01