# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1top 162 1.21e-03 1ncx a.39.1.5 17223 2sas 185 6.07e-02 2sas a.39.1.5 17258 1e0cA 271 7.95e-02 1e0cA c.46.1.2 32717 c.46.1.2 32718 1s29A 92 8.01e-02 unknown_sccs -315 1ggzA 148 1.10e-01 a.39.1.5 70176 1oi7A 288 3.38e-01 c.2.1.8 87049 c.23.4.1 87050 1efyA 350 3.62e-01 1a26 a.41.1.1 17413 d.166.1.2 42275 1nxiA 132 4.18e-01 d.58.47.1 86381 1n25A 368 4.33e-01 c.37.1.20 85264 1f4qA 165 4.54e-01 1alvA a.39.1.8 17360 1auiB 169 4.65e-01 1auiB a.39.1.5 17325 1aerA 205 5.50e-01 1aerA d.166.1.1 42249 1sc3B 88 5.60e-01 1nt4A 391 5.82e-01 c.60.1.2 -7942 1gnlA 544 5.92e-01 e.26.1.1 70287 1eg5A 384 6.17e-01 1ecxA c.67.1.3 34429 1dqeA 137 7.60e-01 1dqeA a.39.2.1 17388 1cbf 285 8.33e-01 1cbf c.90.1.1 35587 1k94A 165 8.42e-01 a.39.1.8 68333 1avsA 90 1.03e+00 1cll a.39.1.5 17226 1k4iA 233 1.05e+00 d.115.1.2 72056 1bmqB 88 1.24e+00 1pauB 1wdcC 156 1.27e+00 1wdcC a.39.1.5 17317 1i2aA 219 1.29e+00 e.24.1.1 -12012 1g57A 217 1.38e+00 1g57A d.115.1.2 60253 1kgdA 180 1.85e+00 c.37.1.1 68582 1kk8B 139 2.03e+00 a.39.1.5 77430 3cla 213 2.24e+00 3cla c.43.1.1 32610 1g4yR 148 2.37e+00 1cll a.39.1.5 60252 1n0wA 243 2.39e+00 c.37.1.11 79772 1b5fA 239 2.46e+00 1smrA b.50.1.2 26836 1vi2A 300 3.10e+00 c.2.1.7 -5960 c.58.1.5 -6366 1ef1A 294 3.10e+00 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 1bj4A 470 3.39e+00 1bj4A c.67.1.4 34479 1rwyA 109 4.00e+00 a.39.1.4 -825 1smlA 269 4.19e+00 1smlA d.157.1.1 42053 1m45A 148 4.52e+00 a.39.1.5 78598 1mdc 133 4.57e+00 1hmt b.60.1.2 27198 1rv3A 483 4.93e+00 1nmeB 92 5.12e+00 1iybA 208 5.49e+00 d.124.1.1 -10977 1wm1A 317 5.62e+00 1qtrA 317 5.66e+00 1qtrA c.69.1.7 34660 2fokA 579 6.07e+00 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1exrA 148 6.83e+00 1cll a.39.1.5 17299 1wdnA 226 6.98e+00 1lst c.94.1.1 35816 1k9uA 78 6.99e+00 a.39.1.10 84348 1j3wA 163 7.01e+00 unknown_sccs -10870 1nbwB 117 7.19e+00 c.51.3.2 80396 1a7w 69 7.25e+00 1a7w a.22.1.2 16477 1q0uA 219 7.28e+00 c.37.1.19 -7205 1vk1A 242 7.34e+00 1ig5A 75 7.72e+00 4icb a.39.1.1 62363 1aozA 552 7.87e+00 1aozA b.6.1.3 23124 b.6.1.3 23125 b.6.1.3 23126 1a99A 344 8.31e+00 1pot c.94.1.1 35812 1fgs 428 8.33e+00 1fgs c.59.1.2 33959 c.72.2.2 34962 1on2A 142 8.40e+00 a.4.5.24 87103 a.76.1.1 87104 1eq9A 222 8.43e+00 5ptp b.47.1.2 26068 1nhkL 144 8.58e+00 1npk d.58.6.1 39142 1cr5A 189 9.04e+00 1cr5A b.52.2.3 26931 d.31.1.1 38465 1cot 129 9.05e+00 1ycc a.3.1.1 15899 1k7hA 476 9.32e+00 c.76.1.1 72101 1iyeA 309 9.33e+00 e.17.1.1 83786 1f46A 140 9.40e+00 1f46A d.129.4.1 59643 1knwA 425 9.41e+00 b.49.2.3 -4274 c.1.6.1 -5229 1nowA 507 9.98e+00 c.1.8.6 85936 d.92.2.1 85937 2polA 366 9.99e+00 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1n0xL 215 1.00e+01 b.1.1.1 -2063 b.1.1.2 -2429 1jv4A 162 1.02e+01 b.60.1.1 67343 1a4iA 301 1.03e+01 1a4iA c.2.1.7 30278 c.58.1.2 33926 1gggA 226 1.03e+01 1lst c.94.1.1 35817 1ok7A 366 1.04e+01 1i05A 180 1.04e+01 1mup b.60.1.1 27130 1i06A 180 1.08e+01 1mup b.60.1.1 27131 1qtqA 553 1.15e+01 1gtrA b.53.1.2 26940 c.26.1.1 31579 4pep 326 1.16e+01 1smrA b.50.1.2 26843 1c7gA 456 1.23e+01 c.67.1.2 -8153 1h65A 270 1.23e+01 c.37.1.8 65640 1auiA 521 1.27e+01 1auiA d.159.1.3 42085 1qo7A 394 1.29e+01 1qo7A c.69.1.11 34697 1oi2A 366 1.33e+01 c.32.1.2 87039 d.79.2.2 87040 1jwqA 179 1.34e+01 unknown_sccs -7897 1npyA 271 1.40e+01 c.2.1.7 85995 c.58.1.5 85996 1n46A 258 1.46e+01 a.123.1.1 85315 1ec7A 446 1.49e+01 1bqg c.1.11.2 29218 d.54.1.1 38862 1pqhA 143 1.54e+01 b.52.2.1 -4318 1mvcA 240 1.54e+01 a.123.1.1 79499 1lucA 355 1.57e+01 1lucA c.1.16.1 29547 1qy1A 174 1.63e+01 b.60.1.1 -4445 1mmiA 366 1.64e+01 d.131.1.1 -11093 d.131.1.1 -11094 d.131.1.1 -11095 1sedA 117 1.69e+01 1s96A 219 1.73e+01 c.37.1.1 -6972 1s6cA 183 1.82e+01 a.39.1.5 -858 1gvjA 146 1.86e+01 a.4.5.21 -293 1k07A 263 1.90e+01 d.157.1.1 77218 1i2kA 269 1.94e+01 e.17.1.1 -11995 1j2gA 319 1.94e+01 4dpvZ 584 1.96e+01 2cas b.121.5.2 23377 5ukdA 194 1.97e+01 1zin c.37.1.1 31851 1fezA 256 1.97e+01 1fezA c.108.1.3 43343 1f02T 66 1.97e+01 1f02T j.67.1.1 46360 1qf9A 194 1.98e+01 1zin c.37.1.1 31848 1paz 123 2.01e+01 1bqk b.6.1.1 22878 1el4A 195 2.05e+01 1ej3A a.39.1.5 59453 1qhxA 178 2.07e+01 1qhsA c.37.1.3 31936 1g7fA 298 2.19e+01 1pty c.45.1.2 60330 1fkx 349 2.21e+01 1a4mA c.1.9.1 29018 1mup 166 2.24e+01 1mup b.60.1.1 27133 1a4mA 349 2.25e+01 1a4mA c.1.9.1 29014 1m6yA 301 2.25e+01 a.60.13.1 78716 c.66.1.23 78717 1b4kA 337 2.27e+01 1b4kA c.1.10.3 29184 1r9cA 139 2.30e+01 d.32.1.2 -9557 1gzgA 337 2.43e+01 c.1.10.3 70805 1bxyA 60 2.48e+01 1bxyA d.59.1.1 39525 3aprE 325 2.49e+01 2er7E b.50.1.2 26820 1lvwA 295 2.49e+01 c.68.1.6 84723 2apr 325 2.50e+01 2er7E b.50.1.2 26819 1nvmA 345 2.50e+01 a.5.7.1 86249 c.1.10.5 86250 1ursA 402 2.52e+01 c.94.1.1 -8651 1wdcB 156 2.53e+01 1wdcB a.39.1.5 17302 2pvbA 107 2.54e+01 1a75A a.39.1.4 17205 1bt0A 76 2.54e+01 1ubi d.15.1.1 37607 1gadO 330 2.60e+01 1dssG c.2.1.3 29950 d.81.1.1 39865 1p9kA 79 2.64e+01 unknown_sccs -10238 1ku1A 230 2.65e+01 a.118.3.1 72996 1gw0A 559 2.66e+01 b.6.1.3 70623 b.6.1.3 70624 b.6.1.3 70625 1f60B 94 2.71e+01 1b64 d.58.12.1 39307 1ex7A 186 2.71e+01 1gky c.37.1.1 59537 1ugmA 125 2.73e+01 1esmA 316 2.76e+01 1esmA c.37.1.6 31953 1lvfA 110 2.78e+01 a.47.2.1 74280 1n82A 331 2.79e+01 c.1.8.3 -5306 1din 236 2.79e+01 1din c.69.1.9 34682 1snrA 341 2.80e+01 1fmjA 351 2.81e+01 c.37.1.5 59879 5pal 109 2.87e+01 1a75A a.39.1.4 17215 1tm0A 350 2.90e+01 1lla 628 2.91e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.18.3 21861 1q44A 326 2.95e+01 c.37.1.5 -7037 1iynA 295 3.03e+01 a.93.1.1 -1244 1fdr 248 3.04e+01 1fdr b.43.4.2 25653 c.25.1.1 31543 1uhnA 189 3.08e+01 a.39.1.5 -853 1sek 378 3.10e+01 1sek e.1.1.1 42675 1pm1X 180 3.12e+01 1iz5A 249 3.19e+01 d.131.1.2 83834 d.131.1.2 83835 1et0A 269 3.20e+01 1et0A e.17.1.1 43289 1j9lA 247 3.22e+01 c.106.1.1 62762 1kx5B 102 3.26e+01 a.22.1.1 77594 1rl6A 177 3.27e+01 1rl6A d.141.1.1 41473 d.141.1.1 41474 2oatA 439 3.30e+01 2dkb c.67.1.4 34452 2liv 344 3.40e+01 2liv c.93.1.1 35708 1b04A 318 3.42e+01 1b04A d.142.2.2 41579 1a8vA 121 3.44e+01 1a62 a.140.3.1 64712 b.40.4.5 64713 4icb 76 3.47e+01 4icb a.39.1.1 17145 1gxrA 337 3.47e+01 b.69.4.1 70722 4ubpA 101 3.48e+01 1ubpA d.8.1.1 37352 1cbs 137 3.51e+01 1hmt b.60.1.2 27201 1i1kA 309 3.55e+01 1daaA e.17.1.1 61533 1qstA 160 3.55e+01 1yghA d.108.1.1 40804 1uuhA 159 3.57e+01 d.169.1.4 -11651 1rg9A 383 3.57e+01 d.130.1.1 -11057 d.130.1.1 -11058 d.130.1.1 -11059 1i7qA 519 3.62e+01 1qdlA d.161.1.1 61901 1p57B 255 3.62e+01 b.47.1.2 -4248 1uzxA 169 3.63e+01 d.20.1.2 -9409 1qv1A 195 3.69e+01 a.39.1.5 -830 1g6hA 257 3.79e+01 1gajA c.37.1.12 60318 1br1B 150 3.81e+01 1wdcC a.39.1.5 17309 1nox 205 3.82e+01 1nox d.90.1.1 40242 1ton 235 3.82e+01 5ptp b.47.1.2 26307 1jf2A 195 3.85e+01 1ej3A a.39.1.5 62930 3psg 370 3.86e+01 1smrA b.50.1.2 26841 1twdA 256 3.87e+01 1hd2A 161 3.91e+01 c.47.1.10 60962 1hq3D 103 3.95e+01 1aoiB a.22.1.1 16464 1tzyD 103 3.95e+01 1dqgA 135 3.96e+01 1dqgA b.42.2.2 25579 1d5rA 324 3.97e+01 1d5rA b.7.1.1 23181 c.45.1.1 32697