# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
2sas	185	1.02e-01	2sas	a.39.1.5	17258
1s29A	92	5.78e-01		unknown_sccs	-315
1top	162	1.10e+00	1ncx	a.39.1.5	17223
1upiA	225	3.09e+00		b.82.1.1	-4823
1nmeA	146	4.12e+00		c.17.1.1	85874
1aerA	205	5.12e+00	1aerA	d.166.1.1	42249
1qjtA	99	5.39e+00	1eh2	a.39.1.6	17335
1f7cA	231	8.43e+00	1f7cA	a.116.1.1	19107
1kgdA	180	9.67e+00		c.37.1.1	68582
3ladA	476	1.03e+01	1lvl	c.3.1.5	30573
				c.3.1.5	30574
				d.87.1.1	40208
1i4mA	108	1.09e+01		d.6.1.1	66025
1k4iA	233	1.39e+01		d.115.1.2	72056
1on2A	142	1.52e+01		a.4.5.24	87103
				a.76.1.1	87104
1b71A	191	1.70e+01	1ryt	a.25.1.1	16647
				g.41.5.1	45246
1nt4A	391	1.74e+01		c.60.1.2	-7942
1vheA	373	1.83e+01		unknown_sccs	-4280
				c.56.5.4	-7890
1lkoA	191	1.84e+01		a.25.1.1	78063
				g.41.5.1	78064
1s4bP	674	1.86e+01			
1rwzA	245	1.87e+01		d.131.1.2	-11106
				d.131.1.2	-11107
1g2iA	166	1.88e+01	1g2iA	c.23.16.2	31438
1qv1A	195	1.91e+01		a.39.1.5	-830
1ri5A	298	1.96e+01		unknown_sccs	-8063
1ryt	190	1.96e+01	1ryt	a.25.1.1	16646
				g.41.5.1	45245
1c17M	177	2.28e+01	1c17M	f.18.1.1	43648
1ggzA	148	2.58e+01		a.39.1.5	70176
1g8iA	190	2.63e+01	1rec	a.39.1.5	60363
1v8dA	235	2.64e+01			
1p9kA	79	2.98e+01		unknown_sccs	-10238
1m65A	245	3.04e+01		c.6.3.1	84847
1el4A	195	3.26e+01	1ej3A	a.39.1.5	59453
2if1	126	3.28e+01	2if1	d.64.1.1	39547
1pylA	97	3.40e+01			
1vjlA	164	3.59e+01		unknown_sccs	-11117
1cl4A	60	3.77e+01	1cl4A	g.40.1.1	45171