;  SAM: prettyalign v3.5 (May 1, 2004) compiled 07/27/04_17:12:31
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, et al., What is the value added by human intervention in protein
;  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
              10        20        30        40        50              
               |         |         |         |         |              
T0262 MPSSSQYRRYQDPHHPSIPTPTTLFSQPSLEILGGGVAEELPELALCCDGTVVEGRS.......
1top  ASMTDQQAEARA----------------------FLSEEMIAEFKAAFDMFDADGGGdistkel


                60              70        80        90                
                 |               |         |         |                
T0262 .........NCRCK......ARAVLPGGMRVRLSKTLAGILRHHPGRY.G.............V
1top  gtvmrmlgqNPTKEeldaiiEEVDEDGSGTIDFEEFLVMMVRQMKEDAk-gkseeelancfri-


            100       110       120       130       140       150     
              |         |         |         |         |         |     
T0262 .RLTREGWARVSEVVEGLRKAGWSWVEEWHIVGVALHDPKGRYELRNGEIRARYGHSIPVNVEP
1top  fDKNADGFIDIEELGEILRATGEH-VTEEDIEDLMKDSDKNN----------------------


        160       170       180       190       200       210       22
          |         |         |         |         |         |         
T0262 LPGEPPPILYHGTTEEALPLIMERGIMRGRRLKVHLTSSLEDAVSTGRRHGNLVAVLLVDVECL
1top  ---------------------------------------------------D------------


      0       230       240       250      
      |         |         |         |      
T0262 RRRGLKVERMSKTVYTVDWVPPECIAEVRRESLGRSL
1top  -----------------GRIDFDEFLKMMEGVQ----