(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0262 1wfx, Aeropyrum pernix
              10        20        30        40         50        60    
              |         |         |         |          |         |    
   1 HLTSSLEDAVSTGRRHGNLVAVLLVDVECLRRRGLKVERMSKTVYTVD.WVPPECIAEVRRESLG
   2 HLSGTYRRSYVSGLYHIDDPFILRIDARSMIDSGHDIYRSSDDIYLTR.EIPPEYIQDAEPEEV-
   3 HLSGTYRRSYVSGLYHIDDPFILRIDARSMIDSGHDIYRSSDDIYLTR.EIPPEYIQDAEPEEV-
   4 HLSKDIETARTVGIRHG-KPVIFSVDAMVMYQSGFTFYCSDNGVYLVD.HVPPEYL---------
   5 HLSPDIRTALAVGTRYG-VPVILEVDAQRMHRQGHTFFVAENGVWLTD.TVPAEFLKEM------
   6 HLSGTYRKSFVSGLYHIDDPLVLAVNARSMIENGIDIFRSNDDIYLTK.QVPPEYITIAEKEE--
   7 HLSLSYEDAYYTGRRHGKDVVVLLIDAECLRRKGYKILKAGKRVRIVK.HVPVECISE-------
   8 HLSADGQTARKVGARHG-KPVVLEIDARAMRQAGLAFYRSDNGVWLID.GVPPVFIR--------
   9 HLSKDIATAQTVGARHG-KPVVFAISAAAMHQAGYIFYCSDNGVWLVD.RVPPEYLQ--------
  10 HLSLSYEDAYYTGRRHGKDVVVLLIDAECLRRKGYKILKAGKRVRIVK.HVPVECISE-------
  11 HLSINYEDAYNTGRRHGEDVVVLIIDAECLRNKGYKILKAGKKVRIVK.HVPVDCI---------
  12 HLSADRTTALAVGQRHG-KPVVLIVDAGQMFADGCRFYLADNGVWLTD.AVPFSYLT--------
  13 HLSKDIETASIVGKRHG-DLVILEVDSESMFKDGIKFYLSKNNVWLCD.YVKVEYIKE-------
  14 HLSLNYEDAYNTGRRHGSNVVVLMIDADCLRKKGFKILKAGKKVRIVK.YVPVDCI---------
  15 HLSPDRETATRVGARRG-RPVVLPVDAATMHRDGHVFHVSANGVWLTQ.HVPSRYL---------
  16 HLSLDRDTALKVGSRHG-APLVLHVRAGEMHARGFAFYRADNGVWLTD.AVAPEFI---------
  17 HLTEDPETALSVGKRYG-QPVLLAVDAKGMFEAGVQFFQADNGVWLVE.AVPIEWLTK-------
  18 HLSERKETALKVGSRRG-KPVIFVIKAQQMSEDGCIFYCSDNGVWLVD.YIDPKYL---------
  19 HLTSSLEDAVSTGRRHGNLVAVLLVDVECLRRRGLKVERMSKTVYTVD.WVPPECIAEVRRESLG
  20 HLSADEETAIQVGSRHG-KPIVLRIKALTMYEQGFYFYQAANGVWLSN.SIPYQFI---------
  21 HLSADIETAKNVATRHSGKYIILEIDTEAMLKENYKFYLSENKVWLTD.FVPSKFI---------
  22 HLTSSLEDAVSTGRRHGNLVAVLLVDVECLRRRGLKVERMSKTVYTVD.WVPPECIAEVRRESLG
  23 HLSADEATARKVGARHG-SPVVLTVKAQEMAKRGIPFWQAENGVWLTS.TVAVEFL---------
  24 HLSADVETAKNVATRHSGKYIILEIDTEAMLKENYKFYLSENKVWLTD.FVPSRFI---------
  25 HLSSTIETAIHVGQRHG-KPVVFTVLAQQMYANDFSFYLSDNGVWLTD.HVPVIYL---------
  26 HLSADEATARKVGARHG-SPVVLTVKAQEMAKRGIPFWQAENGVWLTS.TVAVEFL---------
  27 HLSADVETALQVGKRRDIKPVLLIVNALEAWSEGIKFYLGNDKVWLAD.AIPSKYI---------
  28 HLSARRATALEVGRRYG-SPVLLEIDARDMHLAGHLFHQAENGVWLTE.RVPVRFIR--------
  29 HLSARRATALEVGRRYG-SPVLLEIDARDMHLAGHLFHQAENGVWLTE.RVPVRFIR--------
  30 HLSADEATATNVGSRRG-KPKLLLIAAQRMHQDGHIFYLSENEVWLVD.SVPPTYL---------
  31 HLSADEATARKVGARHG-SPVILTVKAQEMAKRGLPFWQAENGVWLTS.TVAVEFL---------
  32 HLSARRATALEVGRRYG-SPVLLEIDARDMHLAGHLFHQAENGVWLTE.RVPVRFIR--------
  33 HLSADEATARKVGARHG-SPVILTVKAQEMAKRGLPFWQAENGVWLTS.TVAVEFL---------
  34 HLSQDETTALTVGQRHG-RPVVLTVHAAAMTAAGYVFYVSANGVWLTK.QVPARFI---------
  35 HLSEDIITAELVGKRKDKHPIILEVNTGKAREEGVKFYLGNEKVWLAD.EIPSEFI---------
  36 HLSTSYGKAIESASVHTENPVVLEVDVDEAQNNGLHFMLVNDDIVLTD.GVPPEYLSVVEI----
  37 HLSTSYEKAVEVALIHTENPVILQIDAFKAQEDGISLKLATDDIVLAE.RIPPEYLFV-------
  38 -ICPNRQTAASVGQRYG-EPVVLRVDAGRMHRNGLPFFKADNGVWLTA.QVPAAFL---------
  39 HLSTSYEKAAEVALIHTESPVILQVDAFRAQEDGISLKLATDYIVLAE.KIPPEYLYV-------
  40 HMCSSPQEAIEVGKRHSSNPVLLEIDAKGLMQDGIEVRRKG-KVYTVD.FVPPKFIRVLSFDP--
  41 HLSPDFATACQNARRRP-LPVVIEIDAECLRARGYVVYAASGKVRLAK.HVPPECLKK-------
  42 HLSTTYEKAAEVALIHTESPVILQVDAFRAQEDGISLKLATDYIVLAE.KIPPDYLF--------
  43 -LSADTGAAQQVGARRG-RAVALVVATGALREAGYDFFRSDNGVWLTD.TVPPEYLIRFQIE---
  44 HLTDDEREALITALRHTRNPVILVVDAERLRRHGLVPRKAGKNVYVVEgTVPPDCITRVIR----


         
        
   1 RSL
   2 ---
   3 ---
   4 ---
   5 ---
   6 ---
   7 ---
   8 ---
   9 ---
  10 ---
  11 ---
  12 ---
  13 ---
  14 ---
  15 ---
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  17 ---
  18 ---
  19 RSL
  20 ---
  21 ---
  22 RSL
  23 ---
  24 ---
  25 ---
  26 ---
  27 ---
  28 ---
  29 ---
  30 ---
  31 ---
  32 ---
  33 ---
  34 ---
  35 ---
  36 ---
  37 ---
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  44 ---