# List of top-scoring protein chains for T0262.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nf2A 268 2.98e-01 c.108.1.10 -6842 1ou8A 111 8.29e-01 unknown_sccs -3799 1ou9A 129 9.85e-01 unknown_sccs -3801 1esmA 316 9.87e-01 1esmA c.37.1.6 31953 1i8xA 30 1.71e+00 g.3.16.1 71132 1akjD 120 1.79e+00 1cd8 b.1.1.1 19712 1cd8 114 2.26e+00 1cd8 b.1.1.1 19714 1hq0A 295 2.29e+00 1hzgA d.194.1.1 61122 1hzgA 295 2.32e+00 1hzgA d.194.1.1 61436 1iruL 204 2.94e+00 d.153.1.4 71363 1jmlA 72 3.82e+00 d.15.7.1 66887 1dfx 125 4.39e+00 1dfx b.1.13.1 22367 g.41.5.2 45255 1p6gD 205 4.63e+00 i.1.1.1 87822 1qftB 171 4.78e+00 1qftA b.60.1.1 27152 1qftA 175 4.83e+00 1qftA b.60.1.1 27151 1ka2A 499 4.84e+00 d.92.1.5 77305 1kdqB 99 5.07e+00 1i8yA 28 6.00e+00 g.3.16.1 71133 1geqA 248 7.52e+00 2tysA c.1.2.4 28589 1ucvA 81 7.80e+00 a.60.1.2 -1007 1b5wA 130 7.83e+00 3lzt d.2.1.2 36557 1jf3A 147 8.50e+00 a.1.1.2 71642 1smfI 22 9.69e+00 j.38.1.1 46289 1o6aA 96 9.99e+00 unknown_sccs -4101 1dsfH 119 1.01e+01 1igtB b.1.1.1 20247 1nltA 248 1.10e+01 b.4.1.1 -2931 b.4.1.1 -2932 g.54.1.1 -12867 1pfd 96 1.13e+01 1awd d.15.4.1 37677 1oyiA 82 1.18e+01 a.4.5.19 -292 1dwkA 156 1.20e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1rypL 212 1.21e+01 d.153.1.4 41880 1g0uK 212 1.21e+01 d.153.1.4 41893 1g65K 211 1.21e+01 d.153.1.4 41907 1bqhG 129 1.24e+01 1cd8 b.1.1.1 19715 1nziA 159 1.28e+01 b.23.1.1 86449 g.3.11.1 86450 1nezG 128 1.31e+01 b.1.1.1 85592 2hbg 147 1.39e+01 2hbg a.1.1.2 15014 1auuA 55 1.41e+01 1auuA b.35.2.1 24769 1bkb 136 1.42e+01 1bkb b.34.5.2 24609 b.40.4.5 25341 1kxqE 120 1.47e+01 b.1.1.1 73171 1kliH 254 1.62e+01 b.47.1.2 77435 1dcjA 81 1.64e+01 1dcjA d.68.3.3 59115 1ebfA 358 1.69e+01 1ebuA c.2.1.3 30033 d.81.1.2 39948 1q7gA 359 1.70e+01 c.2.1.3 -5888 d.81.1.2 -10471 1ucpA 91 1.70e+01 unknown_sccs -1193 1mgrA 99 1.77e+01 d.1.1.2 79106 1ew0A 130 1.93e+01 1drmA d.110.3.2 40905 2mlp 27 1.98e+01 j.36.3.1 46285 1ehiA 377 1.99e+01 1iow c.30.1.2 31716 d.142.1.1 41484 1vizA 240 2.07e+01 c.1.4.1 -5212 1fy9A 193 2.19e+01 1derA c.8.5.1 30779 1gdhA 320 2.22e+01 1gdhA c.2.1.4 30095 c.23.12.1 31355 1o7sA 127 2.38e+01 b.1.1.1 86644 1g9iI 22 2.43e+01 5sicI 107 2.43e+01 3ssi d.84.1.1 40029 1rvgA 305 2.48e+01 c.1.10.2 -5500 1nkoA 132 2.49e+01 b.1.1.1 85829 1nw9A 98 2.50e+01 g.52.1.1 86293 1fjmA 330 2.50e+01 1auiA d.159.1.3 42082 2tldI 110 2.51e+01 3ssi d.84.1.1 40030 1gl5A 67 2.61e+01 b.34.2.1 65289 1qapA 296 2.61e+01 1qpoA c.1.17.1 29559 d.41.2.1 38595 1b7s 130 2.65e+01 3lzt d.2.1.2 36571 1qntA 176 2.70e+01 1sfe a.4.2.1 16074 c.55.7.1 33749 1g3fA 117 2.73e+01 1g3fA g.52.1.1 45378 1q3xA 328 2.75e+01 1g73C 121 2.76e+01 1g3fA g.52.1.1 45375 1f9xA 120 2.77e+01 1g3fA g.52.1.1 59748 1t39A 188 2.80e+01 1oe8A 211 2.85e+01 a.45.1.1 86905 c.47.1.5 86906 1w0fA 485 2.90e+01 1tqnA 486 2.91e+01 1ouh 130 2.98e+01 3lzt d.2.1.2 36509 1a2xB 47 3.06e+01 1a2xB j.22.1.1 46179 1nepA 130 3.09e+01 b.1.18.7 80440 1jf4A 147 3.13e+01 a.1.1.2 71643 2bqm 130 3.13e+01 3lzt d.2.1.2 36488 1qnzL 112 3.18e+01 32c2A b.1.1.1 20448 1m0uA 249 3.23e+01 a.45.1.1 78359 c.47.1.5 78360 1m2hA 249 3.24e+01 c.31.1.5 84751 1tay 130 3.35e+01 3lzt d.2.1.2 36459 1ayg 80 3.41e+01 451c a.3.1.1 15831 1nbaA 264 3.44e+01 1nbaA unknown_sccs 31753 1se0A 116 3.47e+01 g.52.1.1 -12841 1mzuA 129 3.56e+01 d.110.3.1 79714 1gfjA 130 3.57e+01 3lzt d.2.1.2 36483 1n2aA 201 3.63e+01 a.45.1.1 -938 c.47.1.5 -7463 1ju5A 109 3.63e+01 d.93.1.1 77173 1gb8A 130 3.64e+01 3lzt d.2.1.2 36435 1h0cA 392 3.65e+01 c.67.1.3 83424 1gb5A 130 3.65e+01 3lzt d.2.1.2 36542 1gfkA 130 3.67e+01 3lzt d.2.1.2 36484 1j04A 392 3.68e+01 c.67.1.3 -8171 1qmaA 126 3.70e+01 1ounA d.17.4.2 38096 1ckhA 130 3.70e+01 3lzt d.2.1.2 36564 1jk7A 323 3.75e+01 1auiA d.159.1.3 63144 1b7nA 130 3.78e+01 3lzt d.2.1.2 36468 1uasA 362 3.79e+01 b.71.1.1 88388 c.1.8.1 88389 1ip4A 130 3.84e+01 d.2.1.2 66250 1yao 130 3.85e+01 3lzt d.2.1.2 36489 1tdy 130 3.86e+01 3lzt d.2.1.2 36457 1ip5A 130 3.90e+01 d.2.1.2 66251 1hj9A 226 3.91e+01 b.47.1.2 65845 1gdwA 130 3.91e+01 3lzt d.2.1.2 36535 1b5xA 130 3.94e+01 3lzt d.2.1.2 36550 1ge2A 130 3.96e+01 3lzt d.2.1.2 36547 1gy5A 127 3.98e+01 d.17.4.2 70734 2tldE 220 3.99e+01 5ptp b.47.1.2 25881 1bb4A 130 4.00e+01 3lzt d.2.1.2 36583 1f8fA 371 4.00e+01 b.35.1.2 83246 c.2.1.1 83247