# TARGET T0262 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0262.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.55178 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 H 0.027 0.012 0.015 0.014 0.213 0.719 2 L 0.037 0.024 0.009 0.018 0.201 0.711 3 T 0.032 0.032 0.009 0.014 0.197 0.716 4 S 0.022 0.032 0.008 0.025 0.203 0.710 5 S 0.011 0.008 0.003 0.033 0.089 0.857 6 L 0.001 0.001 0.017 0.970 0.007 0.005 7 E 0.001 0.001 0.011 0.975 0.009 0.004 8 D 0.001 0.001 0.013 0.975 0.009 0.002 9 A 0.004 0.001 0.013 0.971 0.008 0.004 10 V 0.004 0.001 0.010 0.971 0.009 0.005 11 S 0.006 0.001 0.008 0.953 0.018 0.014 12 T 0.010 0.001 0.011 0.886 0.036 0.055 13 G 0.053 0.006 0.029 0.488 0.136 0.288 14 R 0.219 0.021 0.071 0.293 0.236 0.160 15 R 0.281 0.028 0.043 0.186 0.295 0.167 16 H 0.138 0.013 0.026 0.114 0.457 0.252 17 G 0.054 0.009 0.012 0.011 0.498 0.415 18 N 0.050 0.011 0.009 0.004 0.512 0.414 19 L 0.165 0.014 0.003 0.001 0.376 0.441 20 V 0.583 0.006 0.001 0.001 0.108 0.301 21 A 0.941 0.002 0.001 0.001 0.014 0.043 22 V 0.994 0.001 0.001 0.001 0.001 0.004 23 L 0.996 0.001 0.001 0.002 0.001 0.002 24 L 0.989 0.001 0.001 0.005 0.001 0.005 25 V 0.894 0.001 0.001 0.021 0.010 0.073 26 D 0.295 0.003 0.001 0.026 0.039 0.636 27 V 0.006 0.001 0.018 0.902 0.022 0.051 28 E 0.003 0.001 0.044 0.911 0.029 0.013 29 C 0.001 0.001 0.045 0.931 0.021 0.002 30 L 0.001 0.001 0.021 0.958 0.018 0.002 31 R 0.001 0.001 0.010 0.978 0.009 0.002 32 R 0.001 0.001 0.009 0.974 0.011 0.005 33 R 0.001 0.001 0.007 0.922 0.025 0.045 34 G 0.003 0.001 0.002 0.016 0.055 0.923 35 L 0.093 0.006 0.003 0.006 0.081 0.811 36 K 0.744 0.006 0.005 0.005 0.046 0.193 37 V 0.914 0.006 0.008 0.006 0.015 0.051 38 E 0.912 0.005 0.012 0.009 0.032 0.030 39 R 0.725 0.004 0.055 0.014 0.182 0.020 40 M 0.399 0.008 0.042 0.020 0.472 0.060 41 S 0.187 0.008 0.012 0.005 0.730 0.059 42 K 0.458 0.003 0.001 0.001 0.313 0.224 43 T 0.889 0.003 0.001 0.001 0.025 0.081 44 V 0.989 0.001 0.001 0.001 0.003 0.006 45 Y 0.995 0.001 0.001 0.001 0.001 0.004 46 T 0.991 0.001 0.001 0.001 0.002 0.007 47 V 0.944 0.001 0.001 0.001 0.011 0.042 48 D 0.807 0.002 0.004 0.002 0.051 0.134 49 W 0.434 0.017 0.012 0.004 0.141 0.393 50 V 0.165 0.036 0.006 0.004 0.220 0.568 51 P 0.056 0.008 0.003 0.004 0.167 0.763 52 P 0.009 0.001 0.301 0.448 0.166 0.075 53 E 0.014 0.002 0.311 0.507 0.135 0.031 54 C 0.021 0.004 0.287 0.588 0.086 0.014 55 I 0.032 0.004 0.043 0.839 0.045 0.037 56 A 0.027 0.001 0.041 0.881 0.029 0.021 57 E 0.037 0.001 0.034 0.875 0.033 0.019 58 V 0.075 0.005 0.022 0.810 0.046 0.043 59 R 0.055 0.008 0.014 0.810 0.042 0.071 60 R 0.058 0.005 0.027 0.650 0.091 0.168 61 E 0.048 0.005 0.057 0.418 0.180 0.292 62 S 0.035 0.010 0.059 0.321 0.247 0.328 63 L 0.035 0.011 0.066 0.240 0.335 0.313 64 G 0.043 0.013 0.046 0.108 0.282 0.507 65 R 0.043 0.025 0.037 0.108 0.183 0.604 66 S 0.034 0.020 0.010 0.041 0.127 0.767 67 L 0.014 0.005 0.004 0.018 0.071 0.888