# List of top-scoring protein chains for T0262.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dxqA 273 8.70e-01 1d4aA c.23.5.3 31213 1qrdA 273 9.56e-01 1d4aA c.23.5.3 31217 1ar0A 127 1.35e+00 1ounA d.17.4.2 38092 1qmaA 126 1.73e+00 1ounA d.17.4.2 38096 1gy5A 127 1.81e+00 d.17.4.2 70734 1gy6A 127 1.82e+00 d.17.4.2 70736 1jb4A 127 1.88e+00 d.17.4.2 71626 1jb5A 127 1.89e+00 d.17.4.2 71628 1jb2A 127 1.91e+00 d.17.4.2 71624 1askA 127 1.94e+00 1ounA d.17.4.2 38094 1k66A 149 3.49e+00 c.23.1.1 -6406 1keaA 221 3.58e+00 a.96.1.2 68491 1jf3A 147 4.16e+00 a.1.1.2 71642 1ka2A 499 4.44e+00 d.92.1.5 77305 1oe8A 211 4.47e+00 a.45.1.1 86905 c.47.1.5 86906 1nw9A 98 4.63e+00 g.52.1.1 86293 1g3fA 117 5.05e+00 1g3fA g.52.1.1 45378 1f9xA 120 5.11e+00 1g3fA g.52.1.1 59748 2hbg 147 5.13e+00 2hbg a.1.1.2 15014 1g73C 121 5.15e+00 1g3fA g.52.1.1 45375 1nltA 248 5.78e+00 b.4.1.1 -2931 b.4.1.1 -2932 g.54.1.1 -12867 1o6aA 96 8.92e+00 unknown_sccs -4101 1f5mA 180 1.10e+01 1f5mB d.110.2.1 40895 1dg9A 157 1.16e+01 1dg9A c.44.1.1 32637 1jf4A 147 1.20e+01 a.1.1.2 71643 1c0eA 157 1.21e+01 1dg9A c.44.1.1 32638 1akeA 214 1.24e+01 1zin c.37.1.1 31905 g.41.2.1 45185 1e4yA 214 1.26e+01 1zin c.37.1.1 31901 g.41.2.1 45181 1ng7A 60 1.29e+01 a.178.1.1 85671 1m3uA 264 1.32e+01 c.1.12.8 84784 1e4vA 214 1.33e+01 1zin c.37.1.1 31903 g.41.2.1 45183 1jlkA 147 1.34e+01 c.23.1.1 71727 1i3cA 149 1.34e+01 c.23.1.1 71112 1ktbA 405 1.35e+01 b.71.1.1 72960 c.1.8.1 72961 1ucvA 81 1.35e+01 a.60.1.2 -1007 1itzA 675 1.40e+01 c.36.1.6 76798 c.36.1.10 76797 c.48.1.1 76799 1mb3A 124 1.48e+01 c.23.1.1 78907 1geqA 248 1.51e+01 2tysA c.1.2.4 28589 1d5aA 733 1.58e+01 1tgoA c.55.3.5 33723 e.8.1.1 43012 1qqcA 773 1.66e+01 1tgoA c.55.3.5 33724 e.8.1.1 43013 1fepA 724 1.66e+01 1fepA f.4.3.3 43808 1mrzA 293 1.70e+01 b.43.5.1 -4048 c.26.1.3 -6616 1a2xB 47 1.81e+01 1a2xB j.22.1.1 46179 1h4lA 292 1.82e+01 d.144.1.7 70871 1k68A 140 1.90e+01 c.23.1.1 -6403 1o4uA 285 1.97e+01 c.1.17.1 86624 d.41.2.1 86625 1tgoA 773 2.07e+01 1tgoA c.55.3.5 33721 e.8.1.1 43010 1mdbA 539 2.13e+01 e.23.1.1 79008 1l6eA 46 2.15e+01 a.31.1.1 73607 1smfI 22 2.26e+01 j.38.1.1 46289 1f8hA 95 2.42e+01 1eh2 a.39.1.6 17336 1uwvA 433 2.43e+01 unknown_sccs -3950 unknown_sccs -8107 1o20A 427 2.57e+01 c.82.1.1 86556 1kutA 230 2.64e+01 d.143.1.1 73017 1rxiA 131 2.68e+01 1bc6 77 2.75e+01 1a6l d.58.1.2 38986 1jmvA 141 2.79e+01 c.26.2.4 66897 1eh2 106 2.82e+01 1eh2 a.39.1.6 17339 1jf8A 131 2.83e+01 c.44.1.1 66621 1ljuA 131 2.90e+01 c.44.1.1 73944 1mvoA 136 2.97e+01 c.23.1.1 79513 1ljlA 131 3.01e+01 c.44.1.1 73939 1nz6A 101 3.16e+01 a.2.3.1 86441 1zakA 222 3.23e+01 1zin c.37.1.1 31913 g.41.2.1 45202 1qgtA 149 3.26e+01 1qgtA a.62.1.1 18135 2mlp 27 3.29e+01 j.36.3.1 46285 1jniA 123 3.30e+01 a.138.1.3 71761 1a2oA 349 3.32e+01 1chd c.23.1.1 31120 c.40.1.1 32479 1gakA 141 3.40e+01 1gakA a.19.1.1 16415 1ttzA 87 3.41e+01 1lk0A 131 3.42e+01 c.44.1.1 73948 1qftB 171 3.51e+01 1qftA b.60.1.1 27152 1qftA 175 3.54e+01 1qftA b.60.1.1 27151 1qmyA 167 3.65e+01 1qmyA d.3.1.2 37094 1nf2A 268 3.78e+01 c.108.1.10 -6842 1sf8A 126 3.79e+01 1qolA 173 3.82e+01 1qmyA d.3.1.2 37097 1j2vA 102 3.99e+01 d.58.5.2 -9991 1jb0L 154 4.00e+01 1jb0L f.31.1.1 62829