# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mrzA 293 1.01e-01 b.43.5.1 -4048 c.26.1.3 -6616 1tqnA 486 4.92e-01 1e4yA 214 9.59e-01 1zin c.37.1.1 31901 g.41.2.1 45181 1g73C 121 1.07e+00 1g3fA g.52.1.1 45375 1odkA 235 1.54e+00 c.56.2.1 86863 1geqA 248 1.97e+00 2tysA c.1.2.4 28589 2ak3A 226 2.38e+00 1zin c.37.1.1 31892 g.41.2.1 45193 1xyzA 347 2.40e+00 1taxA c.1.8.3 28804 1nf2A 268 2.70e+00 c.108.1.10 -6842 1p3jA 217 2.84e+00 c.37.1.1 -6996 g.41.2.1 -12769 1h75A 81 3.06e+00 1h75A c.47.1.1 60716 1ne2A 200 3.92e+00 c.66.1.32 85586 1o4uA 285 5.35e+00 c.1.17.1 86624 d.41.2.1 86625 1lfpA 249 5.87e+00 e.39.1.1 73885 1v2dA 381 6.51e+00 1q7sA 117 7.20e+00 unknown_sccs -7522 1se0A 116 7.99e+00 g.52.1.1 -12841 1id1A 153 8.39e+00 1id1A c.2.1.9 62286 1i1kA 309 8.86e+00 1daaA e.17.1.1 61533 1iirA 415 9.25e+00 1iirA c.87.1.5 62453 1cc8A 73 9.74e+00 1cc8A d.58.17.1 39343 1r5rA 119 9.77e+00 a.39.2.1 -893 1fm9D 272 9.90e+00 2prgA a.123.1.1 19313 1qftA 175 1.09e+01 1qftA b.60.1.1 27151 1m3uA 264 1.09e+01 c.1.12.8 84784 1iyeA 309 1.12e+01 e.17.1.1 83786 1o6aA 96 1.22e+01 unknown_sccs -4101 1qd1A 325 1.23e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1zin 217 1.27e+01 1zin c.37.1.1 31915 g.41.2.1 45178 1q9uA 130 1.31e+01 unknown_sccs -11025 1eudB 396 1.34e+01 2scuB c.23.4.1 31150 d.142.1.4 41571 1jmvA 141 1.36e+01 c.26.2.4 66897 1kwgA 645 1.36e+01 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 1bjt 793 1.40e+01 1bjt e.11.1.1 43249 1okrA 123 1.42e+01 unknown_sccs -235 1o9gA 250 1.47e+01 c.66.1.29 86692 1ia9A 280 1.48e+01 1ia9A d.144.1.5 62113 1lxa 262 1.61e+01 1lxa b.81.1.1 28052 1fukA 165 1.68e+01 1fukA c.37.1.19 32409 1kevA 351 1.74e+01 1pedA b.35.1.2 24749 c.2.1.1 29765 1gmxA 108 1.76e+01 c.46.1.3 65355 1hk9A 74 1.80e+01 b.38.1.2 83541 1ptmA 329 1.84e+01 unknown_sccs -8456 1s5aA 150 1.91e+01 unknown_sccs -9300 1qwgA 251 1.91e+01 unknown_sccs -5678 1l8rA 101 1.95e+01 a.6.1.4 73700 1oi7A 288 2.11e+01 c.2.1.8 87049 c.23.4.1 87050 1zrn 232 2.20e+01 1qq5A c.108.1.1 43323 1ttzA 87 2.24e+01 1ckmA 330 2.27e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1pgl1 185 2.27e+01 1hw1A 239 2.30e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1v8cA 168 2.33e+01 d.15.3.1 -9175 unknown_sccs -11012 1itwA 741 2.44e+01 c.77.1.2 76793 1rvgA 305 2.49e+01 c.1.10.2 -5500 1b00A 127 2.53e+01 3chy c.23.1.1 31122 1poiB 260 2.61e+01 1poiB unknown_sccs 34155 1e9rA 437 2.65e+01 c.37.1.11 64827 1buoA 121 2.66e+01 1buoA d.42.1.1 38631 1epuA 591 2.67e+01 1dn1A e.25.1.1 43358 1f2aA 215 2.71e+01 1cs8A d.3.1.1 37040 1jqbA 351 2.75e+01 b.35.1.2 77151 c.2.1.1 77152 1kao 167 2.89e+01 1ctqA c.37.1.8 32014 1oe0A 230 2.91e+01 c.37.1.1 -6976 1mkmA 249 2.93e+01 a.4.5.33 79242 d.110.2.2 79243 1sdoA 203 2.97e+01 unknown_sccs -7558 1mb4A 370 3.05e+01 c.2.1.3 78908 d.81.1.1 78909 1bmv1 198 3.21e+01 1bmv1 1akz 223 3.21e+01 3eugA c.18.1.1 31007 1ub0A 258 3.27e+01 c.72.1.2 88394 1gsa 316 3.30e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1pdo 135 3.33e+01 1pdo c.54.1.1 33376 1reqB 637 3.42e+01 1reqB c.1.19.1 29621 c.23.6.1 31248 1vjqA 79 3.50e+01 unknown_sccs -13478 1a78A 134 3.52e+01 1c1lA b.29.1.3 24212 1el5A 389 3.54e+01 1b3mA c.3.1.2 30369 d.16.1.3 37937 1ne8A 117 3.62e+01 b.34.6.2 80424 1ni4B 341 3.75e+01 c.36.1.7 85729 c.48.1.2 85730 1mmsA 140 3.76e+01 1mmsA a.4.7.1 16247 d.47.1.1 38766 1o1zA 234 3.78e+01 c.1.18.3 86555 1s4qA 228 3.90e+01 c.37.1.1 -6975 1s5dA 240 3.92e+01 d.166.1.1 -11563 1li5A 461 4.00e+01 a.27.1.1 73912 c.26.1.1 73913