# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mrzA 293 7.46e-02 b.43.5.1 -4048 c.26.1.3 -6616 1e4yA 214 3.42e-01 1zin c.37.1.1 31901 g.41.2.1 45181 1odkA 235 8.24e-01 c.56.2.1 86863 1xyzA 347 9.13e-01 1taxA c.1.8.3 28804 1lfpA 249 1.02e+00 e.39.1.1 73885 1tqnA 486 1.08e+00 1geqA 248 1.11e+00 2tysA c.1.2.4 28589 1iirA 415 1.45e+00 1iirA c.87.1.5 62453 1q9uA 130 1.73e+00 unknown_sccs -11025 1g73C 121 2.07e+00 1g3fA g.52.1.1 45375 1nf2A 268 2.26e+00 c.108.1.10 -6842 1sdoA 203 2.73e+00 unknown_sccs -7558 1vjqA 79 2.88e+00 unknown_sccs -13478 1h75A 81 3.22e+00 1h75A c.47.1.1 60716 1zrn 232 3.26e+00 1qq5A c.108.1.1 43323 1i1kA 309 3.74e+00 1daaA e.17.1.1 61533 1mdbA 539 3.81e+00 e.23.1.1 79008 1se0A 116 4.15e+00 g.52.1.1 -12841 1ptmA 329 4.18e+00 unknown_sccs -8456 1okrA 123 4.45e+00 unknown_sccs -235 1i12A 160 4.67e+00 1i21A d.108.1.1 61515 1db3A 372 4.69e+00 1db3A c.2.1.2 29813 1id1A 153 4.72e+00 1id1A c.2.1.9 62286 1p3jA 217 4.73e+00 c.37.1.1 -6996 g.41.2.1 -12769 1fukA 165 4.93e+00 1fukA c.37.1.19 32409 1scy 32 4.99e+00 1pnh g.3.7.2 44155 1qwgA 251 5.02e+00 unknown_sccs -5678 1lxa 262 5.04e+00 1lxa b.81.1.1 28052 1hw1A 239 5.04e+00 1e2xA a.4.5.6 16111 a.78.1.1 18441 1cc8A 73 5.32e+00 1cc8A d.58.17.1 39343 1gca 309 5.56e+00 1gca c.93.1.1 35659 1o9gA 250 5.72e+00 c.66.1.29 86692 1r5rA 119 6.15e+00 a.39.2.1 -893 1s5aA 150 6.25e+00 unknown_sccs -9300 1itwA 741 6.51e+00 c.77.1.2 76793 1m6jA 261 6.60e+00 c.1.1.1 78693 2ak3A 226 6.61e+00 1zin c.37.1.1 31892 g.41.2.1 45193 1ejdA 419 6.77e+00 1uae d.68.2.2 39576 1im5A 180 6.85e+00 unknown_sccs 66211 1pwhA 327 7.11e+00 c.79.1.1 -8524 1fm9D 272 7.35e+00 2prgA a.123.1.1 19313 1djnA 729 7.40e+00 2tmdA c.1.4.1 28612 c.3.1.1 30313 c.4.1.1 30598 1kwgA 645 7.47e+00 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 2tmdA 729 7.54e+00 2tmdA c.1.4.1 28616 c.3.1.1 30317 c.4.1.1 30602 1iyeA 309 7.76e+00 e.17.1.1 83786 1dmlB 36 7.81e+00 1dmlB 1cby 259 7.82e+00 1cby d.103.1.1 40705 1wdkC 390 8.09e+00 1mb3A 124 8.20e+00 c.23.1.1 78907 1jmvA 141 8.59e+00 c.26.2.4 66897 1g6sA 427 8.96e+00 1eps d.68.2.2 39584 1dbtA 239 9.02e+00 1dbtA c.1.2.3 28539 1hk9A 74 9.13e+00 b.38.1.2 83541 1rvgA 305 9.16e+00 c.1.10.2 -5500 1hg7A 66 9.18e+00 1msi b.85.1.1 28280 1q7sA 117 9.36e+00 unknown_sccs -7522 1qv9A 283 9.64e+00 unknown_sccs -6888 1ia9A 280 9.94e+00 1ia9A d.144.1.5 62113 1ne2A 200 1.02e+01 c.66.1.32 85586 1jg5A 83 1.02e+01 d.205.1.1 66666 1qdeA 224 1.04e+01 1qvaA c.37.1.19 32410 1epuA 591 1.06e+01 1dn1A e.25.1.1 43358 1o94A 729 1.08e+01 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 1i1dA 161 1.09e+01 1i21A d.108.1.1 61526 1o63A 219 1.09e+01 c.94.1.1 -8691 1m2dA 110 1.09e+01 c.47.1.11 78476 1gmxA 108 1.14e+01 c.46.1.3 65355 1h7sA 365 1.14e+01 d.14.1.3 65705 d.122.1.2 65706 1kao 167 1.14e+01 1ctqA c.37.1.8 32014 1a78A 134 1.26e+01 1c1lA b.29.1.3 24212 1bjt 793 1.28e+01 1bjt e.11.1.1 43249 1qd1A 325 1.29e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1ucsA 64 1.30e+01 b.85.1.1 88466 1ub0A 258 1.31e+01 c.72.1.2 88394 1te2A 226 1.34e+01 1g57A 217 1.35e+01 1g57A d.115.1.2 60253 1o1zA 234 1.35e+01 c.1.18.3 86555 1fecA 490 1.37e+01 3grs c.3.1.5 30489 c.3.1.5 30490 d.87.1.1 40176 1mu5A 471 1.41e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1f9zA 135 1.43e+01 1qipA d.32.1.1 38484 1hnnA 282 1.48e+01 c.66.1.15 65895 1b00A 127 1.51e+01 3chy c.23.1.1 31122 1mmsA 140 1.55e+01 1mmsA a.4.7.1 16247 d.47.1.1 38766 1jf8A 131 1.58e+01 c.44.1.1 66621 1f8fA 371 1.58e+01 b.35.1.2 83246 c.2.1.1 83247 2fokA 579 1.59e+01 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1qopA 268 1.60e+01 2tysA c.1.2.4 28570 1hnjA 317 1.61e+01 1hn9A c.95.1.1 35969 c.95.1.1 35970 1veaA 148 1.64e+01 1jfiA 98 1.66e+01 1jfiA a.22.1.3 62936 1eljA 381 1.68e+01 4mbp c.94.1.1 35791 1v5xA 203 1.69e+01 c.1.2.4 -5169 1m3uA 264 1.72e+01 c.1.12.8 84784 1r0vA 305 1.73e+01 c.52.2.1 -7572 c.52.2.1 -7573 d.75.1.1 -10344 1k0rA 366 1.73e+01 b.40.4.5 67961 d.52.3.1 67962 d.52.3.1 67963 d.202.1.1 67964 1scjB 71 1.76e+01 1scjB d.58.3.2 39069 1dfoA 417 1.76e+01 1bj4A c.67.1.4 34480 1fa8A 135 1.77e+01 1qipA d.32.1.1 38486 1eu8A 409 1.78e+01 1eu8A c.94.1.1 59502 1iv8A 720 1.84e+01 b.71.1.1 76842 c.1.8.1 76843 1m3kA 392 1.86e+01 c.95.1.1 78565 c.95.1.1 78566 1mjhA 162 1.86e+01 1mjhA c.26.2.4 31639 1rhcA 330 1.88e+01 c.1.16.3 -5606 1vfrA 218 1.88e+01 1vfrA d.90.1.1 40247 1qftA 175 1.90e+01 1qftA b.60.1.1 27151 1nar 290 1.90e+01 1nar c.1.8.5 28988 1pgl1 185 1.90e+01 1m4tA 392 1.91e+01 c.95.1.1 78617 c.95.1.1 78618 1qflA 389 1.91e+01 1afwA c.95.1.1 35908 c.95.1.1 35909 1bd3A 243 1.91e+01 1bd3A c.61.1.1 34098 1d3vA 323 1.92e+01 1d3vA c.42.1.1 32559 2tysA 268 1.96e+01 2tysA c.1.2.4 28572 1jhjA 171 1.96e+01 b.18.1.9 66714 1o0pA 104 1.98e+01 d.58.7.1 86535 1reqB 637 1.98e+01 1reqB c.1.19.1 29621 c.23.6.1 31248 1s5dA 240 2.01e+01 d.166.1.1 -11563 1so9A 164 2.07e+01 1v8cA 168 2.10e+01 d.15.3.1 -9175 unknown_sccs -11012 2napA 723 2.12e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1e55A 512 2.12e+01 1e70M c.1.8.4 28934 1h49A 512 2.14e+01 c.1.8.4 83477 1gsa 316 2.15e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1i60A 278 2.16e+01 c.1.15.4 71118 1dqaA 467 2.16e+01 1dqaA d.58.20.1 39364 d.179.1.1 42585 1kevA 351 2.16e+01 1pedA b.35.1.2 24749 c.2.1.1 29765 1hdhA 536 2.18e+01 c.76.1.2 65805 1buoA 121 2.20e+01 1buoA d.42.1.1 38631 1ni4B 341 2.22e+01 c.36.1.7 85729 c.48.1.2 85730 1b7gO 340 2.24e+01 1b7gO c.2.1.3 29992 d.81.1.1 39907 1havA 217 2.24e+01 1havA b.47.1.4 26423 1rlzA 369 2.29e+01 1vkbA 161 2.29e+01 1mkmA 249 2.34e+01 a.4.5.33 79242 d.110.2.2 79243 1fezA 256 2.37e+01 1fezA c.108.1.3 43343 5croA 66 2.38e+01 1orc a.35.1.2 17044 1oi7A 288 2.39e+01 c.2.1.8 87049 c.23.4.1 87050 1f0xA 571 2.40e+01 1f0xA d.58.32.2 39483 d.145.1.1 41746 1j6oA 268 2.47e+01 c.1.9.12 77088 1q6hA 224 2.49e+01 d.26.1.1 -9487 1qh3A 260 2.51e+01 1qh5A d.157.1.2 42059 1o6aA 96 2.52e+01 unknown_sccs -4101 1a8vA 121 2.54e+01 1a62 a.140.3.1 64712 b.40.4.5 64713 1o4uA 285 2.54e+01 c.1.17.1 86624 d.41.2.1 86625 1h8eA 510 2.56e+01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1jqbA 351 2.57e+01 b.35.1.2 77151 c.2.1.1 77152 1zin 217 2.61e+01 1zin c.37.1.1 31915 g.41.2.1 45178 1h1yA 228 2.62e+01 c.1.2.2 76506 1rqlA 267 2.64e+01 c.108.1.3 -6814 1dy9A 187 2.65e+01 1jxpA b.47.1.3 26400 1t2aA 375 2.65e+01 c.2.1.2 -5764 1vicA 262 2.65e+01 c.68.1.13 -8252 1e0tA 470 2.65e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1afwA 393 2.71e+01 1afwA c.95.1.1 35900 c.95.1.1 35901 1sfxA 109 2.72e+01 1j3mA 129 2.73e+01 1qgiA 259 2.73e+01 1qgiA d.2.1.7 37001 1vk8A 106 2.73e+01 1e5mA 416 2.79e+01 1dd8A c.95.1.1 58973 c.95.1.1 58974 1gdhA 320 2.81e+01 1gdhA c.2.1.4 30095 c.23.12.1 31355 1eluA 390 2.83e+01 1elqA c.67.1.3 34434 1elqA 390 2.85e+01 1elqA c.67.1.3 34436 1fmjA 351 2.86e+01 c.37.1.5 59879 1qh5A 260 2.87e+01 1qh5A d.157.1.2 42057 1jd5A 124 2.90e+01 g.52.1.1 66544 1bmv1 198 2.92e+01 1bmv1 1mzbA 136 2.93e+01 unknown_sccs -266 5eau 548 2.94e+01 5eat a.102.4.1 18851 a.128.1.3 19443 1kv8A 216 2.95e+01 c.1.2.3 73054 1q6oA 216 2.95e+01 c.1.2.3 -5162 2sicI 107 2.99e+01 3ssi d.84.1.1 40031 1v8gA 329 3.00e+01 a.46.2.1 -953 c.27.1.1 -6644 2liv 344 3.02e+01 2liv c.93.1.1 35708 1b43A 340 3.02e+01 1a76 a.60.7.1 18092 c.120.1.2 33362 1vkfA 188 3.03e+01 1mvoA 136 3.06e+01 c.23.1.1 79513 1h2wA 710 3.15e+01 b.69.7.1 76596 c.69.1.4 76597 1i1qB 192 3.15e+01 1qdlB c.23.16.1 61544 1gln 468 3.18e+01 1gln a.97.1.1 18752 c.26.1.1 31588 1v2dA 381 3.19e+01 1dcfA 136 3.20e+01 1dcfA c.23.1.2 31124 1s0aA 429 3.24e+01 c.67.1.4 -8201 1iukA 140 3.25e+01 c.2.1.8 83712 1qj5A 429 3.25e+01 1dtyA c.67.1.4 34493 1dfuP 94 3.29e+01 1dfuP b.53.1.1 26936 1jbkA 195 3.30e+01 c.37.1.20 71631 1mj5A 302 3.32e+01 c.69.1.8 -8326 1rf6A 427 3.35e+01 d.68.2.2 -10314 1qfmA 710 3.41e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1ako 268 3.42e+01 1ako d.151.1.1 41779 1fjhA 257 3.43e+01 1fjhB c.2.1.2 29870 1j09A 468 3.46e+01 a.97.1.1 77025 c.26.1.1 77026 1l8rA 101 3.47e+01 a.6.1.4 73700 1auk 489 3.48e+01 1auk c.76.1.2 35030 1p49A 562 3.51e+01 c.76.1.2 -8432 1t95A 240 3.53e+01 1gyxA 76 3.56e+01 d.80.1.1 76387 2irfG 113 3.58e+01 2irfG a.4.5.23 16185 1e2tA 284 3.68e+01 1e2tA d.3.1.5 37121 1qa7A 217 3.72e+01 1havA b.47.1.4 26425 1t9kA 347 3.73e+01 1r1dA 247 3.74e+01 unknown_sccs -8335 1p5fA 189 3.78e+01 c.23.16.2 -6508 1l4uA 176 3.79e+01 c.37.1.2 73568 1dfeA 37 3.82e+01 1dfeA g.42.1.1 45318 1n3bA 216 3.85e+01 c.37.1.1 79959 1qvzA 237 3.87e+01 c.23.16.2 -6537 1j5uA 136 3.87e+01 d.208.1.1 71584 1gmuA 143 3.88e+01 b.107.1.1 65335 d.58.38.1 65336 1oj5A 132 3.91e+01 unknown_sccs -10848 1lt3A 240 3.94e+01 1lt3A d.166.1.1 42230 1q3iA 214 4.00e+01