# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1keaA	221	3.11e-01		a.96.1.2	68491
1thfD	253	8.99e-01	1thfD	c.1.2.1	28535
1vh7A	265	1.55e+00		c.1.2.1	-5159
1geqA	248	2.28e+00	2tysA	c.1.2.4	28589
1jmvA	141	3.97e+00		c.26.2.4	66897
1k66A	149	6.16e+00		c.23.1.1	-6406
1c25	161	6.60e+00	1c25	c.46.1.1	32698
1i3cA	149	1.03e+01		c.23.1.1	71112
1e4yA	214	1.05e+01	1zin	c.37.1.1	31901
				g.41.2.1	45181
1gmxA	108	1.05e+01		c.46.1.3	65355
1j6oA	268	1.09e+01		c.1.9.12	77088
1f5mA	180	1.14e+01	1f5mB	d.110.2.1	40895
1a79A	171	1.32e+01	1a79A	c.52.2.1	33340
				d.75.1.1	39739
1nbaA	264	1.41e+01	1nbaA	unknown_sccs	31753
1nar	290	1.67e+01	1nar	c.1.8.5	28988
1ounA	127	1.87e+01	1ounA	d.17.4.2	38090
1oc2A	348	1.97e+01		c.2.1.2	-5753
1vkfA	188	2.05e+01			
1mb3A	124	2.13e+01		c.23.1.1	78907
1q1aA	289	2.15e+01		c.31.1.5	-6781
1gy6A	127	2.19e+01		d.17.4.2	70736
1dpe	507	2.24e+01	1dpe	c.94.1.1	35799
1v5xA	203	2.27e+01		c.1.2.4	-5169
1hh1A	143	2.29e+01	1gefA	c.52.1.18	61036
1f3z	161	2.57e+01	1gpr	b.84.3.1	28273
1dg9A	157	2.65e+01	1dg9A	c.44.1.1	32637
1ig0A	319	2.71e+01	1ig0A	b.82.6.1	62354
				c.100.1.1	62355
1h8eA	510	2.74e+01	1skyB	a.69.1.1	60738
				b.49.1.1	60739
				c.37.1.11	60740
1mjc	69	2.81e+01	1mjc	b.40.4.5	25319
2eifA	136	2.94e+01	1bkb	b.34.5.2	24607
				b.40.4.5	25339
1kutA	230	2.98e+01		d.143.1.1	73017
1mrzA	293	3.08e+01		b.43.5.1	-4048
				c.26.1.3	-6616
1n3bA	216	3.16e+01		c.37.1.1	79959
1kepA	348	3.32e+01		c.2.1.2	68536
1vhvA	268	3.37e+01		c.90.1.1	-8619
1e79A	510	3.54e+01	1skyB	a.69.1.1	18269
				b.49.1.1	26434
				c.37.1.11	32314
1srrA	124	3.69e+01	1dz3A	c.23.1.1	31110
1gbs	185	3.70e+01	153l	d.2.1.5	36986