# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ks9A 291 2.62e+00 a.100.1.7 68857 c.2.1.6 68858 1mr7A 209 3.44e+00 b.81.1.3 -4798 1ap8 213 5.90e+00 1ap8 d.86.1.1 40151 1dxrL 273 6.39e+00 6prcL f.26.1.1 43431 1pqzA 238 6.41e+00 1cc1S 283 6.47e+00 2frvA e.19.1.1 43313 1j58A 385 9.68e+00 b.82.1.2 71531 1r7lA 110 1.37e+01 1pztA 286 1.40e+01 c.68.1.2 -8213 1tplA 426 1.47e+01 1ax4A c.67.1.2 34387 1o7fA 469 1.52e+01 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1o4tA 133 1.54e+01 b.82.1.9 86622 1uzpA 162 1.66e+01 g.3.11.1 -12511 g.3.11.1 -12512 g.23.1.1 -12685 1nf5B 286 1.82e+01 c.68.1.2 80454 1l6uA 128 1.90e+01 d.15.4.1 73630 1p97A 114 2.04e+01 unknown_sccs -10844 1kllA 130 2.07e+01 d.32.1.2 72720 1g25A 65 2.16e+01 1g25A g.44.1.1 45325 1i7hA 111 2.18e+01 d.15.4.1 71122 1eit 37 2.24e+01 1eit g.3.6.2 44108 1auiA 521 2.33e+01 1auiA d.159.1.3 42085 1ylvA 342 2.35e+01 1b4kA c.1.10.3 29180 1jn8B 273 2.37e+01 6prcL 273 2.39e+01 6prcL f.26.1.1 43434 1fgxA 288 2.41e+01 1fgxA c.68.1.2 34508 1nmmB 286 2.44e+01 c.68.1.2 80662 1j8wB 273 2.51e+01 1awe 130 2.71e+01 1awe b.55.1.1 26968 1d5mB 192 2.72e+01 1iakB b.1.1.2 21618 d.19.1.1 38192 1m16A 146 2.79e+01 b.42.1.1 -3987 1aw5 326 2.79e+01 1b4kA c.1.10.3 29181 1je6A 275 2.93e+01 b.1.1.2 71638 d.19.1.1 71639 1hsbB 99 2.93e+01 1agdB b.1.1.2 20737 1iibA 106 2.96e+01 1iibA c.44.2.1 32648 1kk6A 209 3.11e+01 b.81.1.3 68657 1nrgA 261 3.15e+01 b.45.1.1 80694 1p49A 562 3.24e+01 c.76.1.2 -8432 1ffkN 95 3.26e+01 1ffkN b.34.5.1 24606 1duzB 100 3.28e+01 1agdB b.1.1.2 20671 1dl0A 37 3.28e+01 1dl0A g.3.6.2 44112 1by6A 36 3.42e+01 1by6A j.39.1.1 46301 1agdB 99 3.46e+01 1agdB b.1.1.2 20742 1q7rA 219 3.64e+01 c.23.16.1 -6507 1napA 70 3.67e+01 1tvxA d.9.1.1 37445 1tvxB 75 3.76e+01 1tvxA d.9.1.1 37442 1tvxA 75 3.78e+01 1tvxA d.9.1.1 37441 1uvqB 198 3.79e+01 b.1.1.2 -2659 d.19.1.1 -9348 1bec 238 3.97e+01 1bec b.1.1.1 20627 b.1.1.2 21561 1qq2A 199 3.98e+01 1qq2A c.47.1.10 33064 1l1qA 186 4.00e+01 c.61.1.1 77653