# List of top-scoring protein chains for t2k-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1f00I	282	1.44e+00	1f00I	b.1.14.1	22368
				b.1.14.1	22369
				d.169.1.3	42439
1g25A	65	2.14e+00	1g25A	g.44.1.1	45325
1vi7A	217	3.25e+00		unknown_sccs	-9115
				unknown_sccs	-10052
1p49A	562	3.41e+00		c.76.1.2	-8432
1e5uI	187	3.83e+00	1f00I	b.1.14.1	22372
				d.169.1.3	42441
1f3vA	179	5.94e+00	1f3vA	d.58.22.1	39382
1iva	48	8.24e+00	1agg	g.3.6.2	44106
1p9gA	41	8.43e+00			
1uzpA	162	1.15e+01		g.3.11.1	-12511
				g.3.11.1	-12512
				g.23.1.1	-12685
1bea	127	1.44e+01	1bea	a.52.1.2	17826
1he7A	126	1.53e+01	1wwcA	b.1.1.4	60970
1qhsA	178	1.55e+01	1qhsA	c.37.1.3	31938
1bfa	134	1.73e+01	1bea	a.52.1.2	17827
1jeiA	53	1.75e+01	1jeiA	a.140.1.1	62918
1qhxA	178	1.83e+01	1qhsA	c.37.1.3	31936
1m0gA	30	1.96e+01		g.46.1.1	84743
1sfp	114	2.03e+01	1sfp	b.23.1.1	23895
1aw5	326	2.13e+01	1b4kA	c.1.10.3	29181
1iynA	295	2.27e+01		a.93.1.1	-1244
1auk	489	2.33e+01	1auk	c.76.1.2	35030
1usmA	80	2.43e+01		d.74.1.1	-10334
1vc4A	254	2.94e+01		c.1.2.4	-5172
1pqzA	238	2.97e+01			
1czfA	362	3.03e+01	1czfA	b.80.1.3	28031
1josA	128	3.08e+01		d.52.7.1	84191
1eit	37	3.34e+01	1eit	g.3.6.2	44108
1wwaX	109	3.46e+01	1wwcA	b.1.1.4	21775
1tltA	319	3.57e+01			
1ylvA	342	3.61e+01	1b4kA	c.1.10.3	29180
1j6rA	214	3.63e+01		d.173.1.2	71598
1i7hA	111	3.87e+01		d.15.4.1	71122
1t62A	166	3.88e+01			
1l6xB	34	3.89e+01		k.13.1.1	73644
1f2hA	169	3.98e+01	1f3vA	d.58.22.1	59612