# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ks9A	291	1.29e+00		a.100.1.7	68857
				c.2.1.6	68858
1pqzA	238	4.96e+00			
1tplA	426	6.88e+00	1ax4A	c.67.1.2	34387
1kk6A	209	1.12e+01		b.81.1.3	68657
1mr7A	209	1.13e+01		b.81.1.3	-4798
1ylvA	342	1.18e+01	1b4kA	c.1.10.3	29180
1ap8	213	1.36e+01	1ap8	d.86.1.1	40151
1l1qA	186	1.38e+01		c.61.1.1	77653
1aw5	326	1.47e+01	1b4kA	c.1.10.3	29181
1uzpA	162	1.70e+01		g.3.11.1	-12511
				g.3.11.1	-12512
				g.23.1.1	-12685
1hzdA	272	1.97e+01		c.14.1.3	65969
1v5sA	126	2.00e+01			
1h7nA	342	2.32e+01	1b4kA	c.1.10.3	60726
1qm9A	198	2.33e+01	1qm9A	d.58.7.1	39207
				d.58.7.1	39208
1t82A	155	2.48e+01			
1ohlA	342	2.49e+01		c.1.10.3	87035
1r7lA	110	2.58e+01			
1o7fA	469	2.59e+01		a.4.5.31	81131
				b.82.3.2	81132
				b.82.3.2	81133
1f00I	282	2.71e+01	1f00I	b.1.14.1	22368
				b.1.14.1	22369
				d.169.1.3	42439
1q7rA	219	2.89e+01		c.23.16.1	-6507
1pztA	286	2.98e+01		c.68.1.2	-8213
1ud9A	245	3.04e+01			
1vhrA	184	3.11e+01	1vhrA	c.45.1.1	32651
1dl0A	37	3.11e+01	1dl0A	g.3.6.2	44112
1nmmB	286	3.11e+01		c.68.1.2	80662
1eit	37	3.17e+01	1eit	g.3.6.2	44108
1jn8B	273	3.23e+01			
1k87A	669	3.43e+01		a.176.1.1	77286
				c.1.23.2	77287
1awe	130	3.48e+01	1awe	b.55.1.1	26968
1nf5B	286	3.48e+01		c.68.1.2	80454
1j8wB	273	3.61e+01			
1g25A	65	3.61e+01	1g25A	g.44.1.1	45325
1vi7A	217	3.63e+01		unknown_sccs	-9115
				unknown_sccs	-10052
1fgxA	288	3.64e+01	1fgxA	c.68.1.2	34508
1d5mB	192	3.65e+01	1iakB	b.1.1.2	21618
				d.19.1.1	38192
1h3nA	878	3.70e+01		a.27.1.1	76641
				b.51.1.1	76642
				c.26.1.1	76643
1ekjB	221	3.99e+01	1ekjB	c.53.2.1	33365