# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ks9A 291 4.03e-01 a.100.1.7 68857 c.2.1.6 68858 1tplA 426 2.73e+00 1ax4A c.67.1.2 34387 1q7rA 219 3.78e+00 c.23.16.1 -6507 6prcL 273 4.35e+00 6prcL f.26.1.1 43434 1dxrL 273 4.63e+00 6prcL f.26.1.1 43431 1cc1S 283 6.46e+00 2frvA e.19.1.1 43313 1o7fA 469 6.98e+00 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1hzdA 272 8.36e+00 c.14.1.3 65969 1j5uA 136 8.56e+00 d.208.1.1 71584 1r7lA 110 9.35e+00 1srvA 145 9.97e+00 1derA c.8.5.1 30817 1bs9 207 1.18e+01 1bs9 unknown_sccs 31330 1g66A 207 1.19e+01 1bs9 unknown_sccs 31329 1vi7A 217 1.26e+01 unknown_sccs -9115 unknown_sccs -10052 1mr7A 209 1.26e+01 b.81.1.3 -4798 1r9gA 216 1.26e+01 c.23.16.1 -6504 1ud9A 245 1.28e+01 1kk6A 209 1.29e+01 b.81.1.3 68657 1pqzA 238 1.49e+01 3pviA 157 1.57e+01 3pviA c.52.1.6 33300 1qm9A 198 1.57e+01 1qm9A d.58.7.1 39207 d.58.7.1 39208 1v5sA 126 1.59e+01 1kllA 130 1.78e+01 d.32.1.2 72720 1bno 87 2.11e+01 1bpyA a.60.6.1 18079 1p97A 114 2.29e+01 unknown_sccs -10844 1i7dA 659 2.35e+01 1d6mA e.10.1.1 61886 1qlwA 328 2.38e+01 1qlwA c.69.1.15 34722 1lbvA 252 2.48e+01 e.7.1.1 73813 1uzpA 162 2.53e+01 g.3.11.1 -12511 g.3.11.1 -12512 g.23.1.1 -12685 1dt6A 473 2.64e+01 1dt6A a.104.1.1 18977 1d5mB 192 2.83e+01 1iakB b.1.1.2 21618 d.19.1.1 38192 1iva 48 2.92e+01 1agg g.3.6.2 44106 1sbxA 106 2.93e+01 1h7eA 245 2.98e+01 c.68.1.13 60717 1iibA 106 3.06e+01 1iibA c.44.2.1 32648 1vhrA 184 3.07e+01 1vhrA c.45.1.1 32651 1gesA 450 3.09e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1ux5A 411 3.23e+01 unknown_sccs -1768 2pviA 157 3.26e+01 3pviA c.52.1.6 33302 1k87A 669 3.36e+01 a.176.1.1 77286 c.1.23.2 77287 1jt7A 146 3.44e+01 b.42.1.1 67255 1oruA 195 3.45e+01 unknown_sccs -4390 1k28A 584 3.46e+01 b.40.8.1 68049 b.108.1.2 68050 d.2.1.3 68051 1uvqB 198 3.47e+01 b.1.1.2 -2659 d.19.1.1 -9348 1qq2A 199 3.56e+01 1qq2A c.47.1.10 33064 1k8kC 372 3.64e+01 b.69.4.1 68308 1c7gA 456 3.67e+01 c.67.1.2 -8153 1tx4B 178 3.74e+01 1ctqA c.37.1.8 32045 1h3nA 878 3.74e+01 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643 1o4tA 133 3.81e+01 b.82.1.9 86622 1vjqA 79 3.82e+01 unknown_sccs -13478 1egwA 77 3.86e+01 1mnmA d.88.1.1 40234 1j3mA 129 3.92e+01 1nr6A 473 3.98e+01 a.104.1.1 -1464 1jb9A 316 4.00e+01 1fnc b.43.4.2 62840 c.25.1.1 62841