# List of top-scoring protein chains for t2k-100-30-bys hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1mr7A	209	1.48e+00		b.81.1.3	-4798
1ks9A	291	1.96e+00		a.100.1.7	68857
				c.2.1.6	68858
1kk6A	209	3.83e+00		b.81.1.3	68657
1i7hA	111	4.03e+00		d.15.4.1	71122
1pqzA	238	4.87e+00			
1uzpA	162	6.74e+00		g.3.11.1	-12511
				g.3.11.1	-12512
				g.23.1.1	-12685
1qb0A	211	7.97e+00	1c25	c.46.1.1	32699
1r7lA	110	1.10e+01			
1d9eA	284	1.32e+01	1d9eA	c.1.10.4	29195
1kllA	130	1.34e+01		d.32.1.2	72720
2occB	227	1.54e+01	2occB	b.6.1.2	23027
				f.17.2.1	43519
3vub	101	1.61e+01	3vub	b.34.6.1	24613
1ekjB	221	1.67e+01	1ekjB	c.53.2.1	33365
1ekjA	221	1.73e+01	1ekjB	c.53.2.1	33364
1he7A	126	1.74e+01	1wwcA	b.1.1.4	60970
1g1pA	33	1.87e+01	1g1pA	g.3.6.1	44099
1ylvA	342	2.03e+01	1b4kA	c.1.10.3	29180
1jb9A	316	2.42e+01	1fnc	b.43.4.2	62840
				c.25.1.1	62841
1je6A	275	2.52e+01		b.1.1.2	71638
				d.19.1.1	71639
1aw5	326	2.62e+01	1b4kA	c.1.10.3	29181
1dl0A	37	2.63e+01	1dl0A	g.3.6.2	44112
1v54B	227	2.74e+01		b.6.1.2	-2946
				f.17.2.1	-12243
1qubA	319	2.85e+01	1qubA	g.18.1.1	44863
				g.18.1.1	44864
				g.18.1.1	44865
				g.18.1.1	44866
				g.18.1.1	44867
1bs9	207	2.86e+01	1bs9	unknown_sccs	31330
1g66A	207	2.90e+01	1bs9	unknown_sccs	31329
1lvmA	229	2.92e+01		b.47.1.3	78243
1h3nA	878	2.98e+01		a.27.1.1	76641
				b.51.1.1	76642
				c.26.1.1	76643
1eit	37	3.00e+01	1eit	g.3.6.2	44108
1bx7	55	3.04e+01	1bx7	g.3.15.1	44355
1hd8A	363	3.11e+01		b.105.1.1	65803
				e.3.1.1	65804
1f2rI	100	3.14e+01	1c9fA	d.15.2.1	37641
1k87A	669	3.24e+01		a.176.1.1	77286
				c.1.23.2	77287
1mwpA	96	3.25e+01	1mwpA	d.170.2.1	42453
1wwaX	109	3.26e+01	1wwcA	b.1.1.4	21775
1dbhA	354	3.34e+01	1awe	a.87.1.1	18514
				b.55.1.1	26967
1josA	128	3.45e+01		d.52.7.1	84191
1tplA	426	3.75e+01	1ax4A	c.67.1.2	34387
1qlwA	328	3.79e+01	1qlwA	c.69.1.15	34722
1h7nA	342	3.95e+01	1b4kA	c.1.10.3	60726