# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1g25A	65	6.06e-01	1g25A	g.44.1.1	45325
1wwaX	109	4.68e+00	1wwcA	b.1.1.4	21775
1p49A	562	4.92e+00		c.76.1.2	-8432
1auk	489	8.46e+00	1auk	c.76.1.2	35030
1v5sA	126	8.68e+00			
1vi7A	217	8.75e+00		unknown_sccs	-9115
				unknown_sccs	-10052
1f00I	282	9.84e+00	1f00I	b.1.14.1	22368
				b.1.14.1	22369
				d.169.1.3	42439
1by6A	36	1.06e+01	1by6A	j.39.1.1	46301
1ug0A	88	1.18e+01			
3pviA	157	1.25e+01	3pviA	c.52.1.6	33300
1he7A	126	1.34e+01	1wwcA	b.1.1.4	60970
3ezmA	101	1.44e+01	3ezmA	b.89.1.1	28395
1p9gA	41	1.50e+01			
1usmA	80	1.54e+01		d.74.1.1	-10334
1f2hA	169	1.76e+01	1f3vA	d.58.22.1	59612
1jeiA	53	1.78e+01	1jeiA	a.140.1.1	62918
1izlE	83	1.87e+01		i.5.1.1	76998
1qhxA	178	1.97e+01	1qhsA	c.37.1.3	31936
1psyA	125	2.05e+01		a.52.1.3	-986
1josA	128	2.09e+01		d.52.7.1	84191
1i7hA	111	2.19e+01		d.15.4.1	71122
1qhsA	178	2.37e+01	1qhsA	c.37.1.3	31938
1nqzA	194	2.81e+01		d.113.1.1	86077
1uzpA	162	3.01e+01		g.3.11.1	-12511
				g.3.11.1	-12512
				g.23.1.1	-12685
1hucA	47	3.05e+01	1hucA	d.3.1.1	37049
1os6A	71	3.07e+01		a.138.1.1	-2034
1aym3	238	3.21e+01	1aym3		
1pvc3	238	3.25e+01	1aym3		
1uvqB	198	3.32e+01		b.1.1.2	-2659
				d.19.1.1	-9348
1qm9A	198	3.34e+01	1qm9A	d.58.7.1	39207
				d.58.7.1	39208
1g1pA	33	3.37e+01	1g1pA	g.3.6.1	44099
1auiA	521	3.39e+01	1auiA	d.159.1.3	42085
1bfa	134	3.65e+01	1bea	a.52.1.2	17827
1bea	127	3.71e+01	1bea	a.52.1.2	17826
1f16A	192	3.80e+01	1f16A	f.1.4.1	43400
1hxs3	237	3.84e+01			
1bal	51	3.89e+01	1bbl	a.9.1.1	16357
1pqzA	238	3.99e+01