# List of top-scoring protein chains for T0262.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g25A 65 1.94e+00 1g25A g.44.1.1 45325 1ylvA 342 1.97e+00 1b4kA c.1.10.3 29180 1aw5 340 2.09e+00 1b4kA c.1.10.3 29181 1n9wA 422 2.20e+00 b.40.4.1 85473 d.104.1.1 85474 1h7nA 340 4.03e+00 1b4kA c.1.10.3 60726 1h7oA 341 4.05e+00 c.1.10.3 60727 1ohlA 342 4.06e+00 c.1.10.3 87035 1bfa 134 4.80e+00 1bea a.52.1.2 17827 1bea 127 4.80e+00 1bea a.52.1.2 17826 1autL 114 4.96e+00 1hcgB g.3.11.1 44244 g.3.11.1 44245 1qhxA 178 5.52e+00 1qhsA c.37.1.3 31936 1pztA 286 6.88e+00 c.68.1.2 -8213 1tltA 319 7.97e+00 1nmmB 286 8.12e+00 c.68.1.2 80662 1fgxA 288 8.55e+00 1fgxA c.68.1.2 34508 1fr8A 288 8.66e+00 1fgxA c.68.1.2 34510 1nf5B 286 8.71e+00 c.68.1.2 80454 1p9gA 41 8.83e+00 1i7hA 111 1.05e+01 d.15.4.1 71122 1f00I 282 1.06e+01 1f00I b.1.14.1 22368 b.1.14.1 22369 d.169.1.3 42439 1pieA 419 1.14e+01 d.14.1.5 -9075 unknown_sccs -10120 1lqsL 157 1.22e+01 a.26.1.3 74192 1jeiA 53 1.49e+01 1jeiA a.140.1.1 62918 1p22B 145 1.51e+01 a.157.1.1 87717 d.42.1.1 87718 1dj2A 443 1.53e+01 1adeA c.37.1.10 32237 1d2jA 40 1.57e+01 1ajj g.12.1.1 44617 1f2hA 169 1.69e+01 1f3vA d.58.22.1 59612 1op2A 234 1.81e+01 1op0A 234 1.82e+01 1pqzA 238 1.83e+01 1psyA 125 1.84e+01 a.52.1.3 -986 1g66A 207 1.92e+01 1bs9 unknown_sccs 31329 1f8zA 39 1.97e+01 1ajj g.12.1.1 44612 1f3vA 179 2.01e+01 1f3vA d.58.22.1 39382 1cbiA 136 2.12e+01 1hmt b.60.1.2 27209 1lomA 101 2.21e+01 b.89.1.1 74152 1r4oA 92 2.27e+01 g.39.1.2 -12733 1f6yA 262 2.35e+01 1f6yA c.1.21.2 29673 1iva 48 2.38e+01 1agg g.3.6.2 44106 1jqkA 639 2.58e+01 e.26.1.2 67101 1hzdA 272 2.75e+01 c.14.1.3 65969 1e5uI 187 2.91e+01 1f00I b.1.14.1 22372 d.169.1.3 42441 1g1pA 33 3.16e+01 1g1pA g.3.6.1 44099 1latA 82 3.20e+01 2nllB g.39.1.2 45122 1dtzA 689 3.22e+01 1cb6A c.94.1.2 59134 c.94.1.2 59135 1gkrA 458 3.26e+01 b.92.1.3 70251 c.1.9.6 70252 1rraA 124 3.58e+01 7rsa d.5.1.1 37277 1ebkC 99 3.88e+01 1hvc b.50.1.1 26610