# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jj2P 95 1.49e-01 1ffkN b.34.5.1 63101 1s72Q 96 2.01e-01 1cc1S 283 3.65e-01 2frvA e.19.1.1 43313 1v5sA 126 6.15e-01 1vi7A 217 7.04e-01 unknown_sccs -9115 unknown_sccs -10052 1r7lA 110 8.90e-01 1he7A 126 2.28e+00 1wwcA b.1.1.4 60970 1p97A 114 2.36e+00 unknown_sccs -10844 1tyv 542 2.97e+00 1tyv b.80.1.6 28038 1jmcA 246 3.21e+00 1jmcA b.40.4.3 25300 b.40.4.3 25301 1kllA 130 3.52e+00 d.32.1.2 72720 1dwkA 156 3.97e+00 1dw9A a.35.1.4 17075 d.72.1.1 39606 1id0A 152 4.47e+00 d.122.1.3 66111 1uyrA 737 4.69e+00 c.14.1.4 -6258 c.14.1.4 -6259 1sbxA 106 5.39e+00 1r4xA 275 6.38e+00 unknown_sccs -2846 unknown_sccs -10776 1ov3A 138 6.53e+00 b.34.2.1 87451 b.34.2.1 87452 1rds 105 7.09e+00 9rnt d.1.1.4 36236 1i7dA 659 7.74e+00 1d6mA e.10.1.1 61886 1uzpA 162 7.92e+00 g.3.11.1 -12511 g.3.11.1 -12512 g.23.1.1 -12685 1havA 217 1.06e+01 1havA b.47.1.4 26423 1v9jA 113 1.06e+01 d.52.6.1 -9781 1eit 37 1.10e+01 1eit g.3.6.2 44108 1n6zA 105 1.16e+01 unknown_sccs 85369 2occF 98 1.16e+01 2occF g.41.5.3 45256 1v54F 98 1.18e+01 g.41.5.3 -12788 1ftrA 296 1.18e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1iw7E 99 1.19e+01 a.143.1.1 71476 3pviA 157 1.21e+01 3pviA c.52.1.6 33300 1sgoA 139 1.26e+01 unknown_sccs -10487 1n3hA 207 1.29e+01 b.55.1.2 -4350 1h9oA 112 1.31e+01 1qadA d.93.1.1 60837 1hl9A 449 1.40e+01 unknown_sccs -4694 unknown_sccs -5365 1vjqA 79 1.44e+01 unknown_sccs -13478 1nqzA 194 1.44e+01 d.113.1.1 86077 1i8jA 323 1.49e+01 1b4kA c.1.10.3 61968 1i07A 60 1.50e+01 1aojA b.34.2.1 61477 2pviA 157 1.51e+01 3pviA c.52.1.6 33302 1mpxA 615 1.51e+01 b.18.1.13 85041 c.69.1.21 85042 1p49A 562 1.54e+01 c.76.1.2 -8432 1k87A 669 1.55e+01 a.176.1.1 77286 c.1.23.2 77287 1dl0A 37 1.60e+01 1dl0A g.3.6.2 44112 1dvkA 173 1.62e+01 1dvkA a.72.1.1 18319 1ks9A 291 1.64e+01 a.100.1.7 68857 c.2.1.6 68858 1l6sA 323 1.77e+01 c.1.10.3 73627 1kwaA 88 1.79e+01 1kwaA b.36.1.1 24772 1tig 94 1.82e+01 1tig d.68.1.1 39566 1c3jA 351 1.89e+01 1c3jA c.87.1.1 35459 1j5uA 136 1.92e+01 d.208.1.1 71584 1f9zA 135 1.94e+01 1qipA d.32.1.1 38484 1hcnA 92 2.02e+01 1hcnA g.17.1.4 44809 4ubpA 101 2.10e+01 1ubpA d.8.1.1 37352 1o5uA 101 2.12e+01 b.82.1.8 -4845 1qa7A 217 2.18e+01 1havA b.47.1.4 26425 1i0vA 104 2.24e+01 9rnt d.1.1.4 36054 1h9sA 140 2.26e+01 1b9mA b.40.6.2 60843 b.40.6.2 60844 1jpaA 312 2.27e+01 d.144.1.7 67011 1fjgL 135 2.31e+01 1fjfL b.40.4.5 25346 1lt8A 406 2.36e+01 c.1.26.1 78186 1r0pA 312 2.37e+01 d.144.1.7 -11377 1jenA 267 2.41e+01 1jenA 1lj5A 379 2.45e+01 e.1.1.1 73928 1gadO 330 2.48e+01 1dssG c.2.1.3 29950 d.81.1.1 39865 1ub1A 133 2.54e+01 d.10.1.3 -8969 1fa8A 135 2.56e+01 1qipA d.32.1.1 38486 1rxyA 253 2.60e+01 c.56.2.1 -7834 1k5nB 100 2.63e+01 b.1.1.2 77268 1i4fB 100 2.63e+01 1agdB b.1.1.2 61689 1j3mA 129 2.65e+01 1i0cA 60 2.66e+01 1aojA b.34.2.1 61485 1p63A 144 2.82e+01 b.42.1.1 -4002 1srvA 145 2.84e+01 1derA c.8.5.1 30817 1jixA 351 2.86e+01 1c3jA c.87.1.1 63081 1ew4A 106 2.89e+01 1ew4A d.82.2.1 40023 1bxvA 91 2.92e+01 1aac b.6.1.1 22875 1lvk 762 2.96e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1cz4A 185 2.97e+01 1cz4A b.52.2.3 26934 d.31.1.1 38468 1bylA 125 2.99e+01 1bylA d.32.1.2 38495 1a0cA 438 3.07e+01 1a0cA c.1.15.3 29529 1ejxA 100 3.16e+01 d.8.1.1 83182 1v74A 107 3.19e+01 unknown_sccs -9319 1qr0A 228 3.19e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1oruA 195 3.31e+01 unknown_sccs -4390 2irfG 113 3.36e+01 2irfG a.4.5.23 16185 1m2eA 135 3.42e+01 c.23.1.5 78478 1vgyA 393 3.43e+01 c.56.5.4 -7882 d.58.19.1 -10106 1obfO 335 3.47e+01 c.2.1.3 86768 d.81.1.1 86769 1mq7A 154 3.50e+01 b.85.4.1 79404 1jkeA 145 3.62e+01 c.110.1.1 66791 1lqpA 135 3.65e+01 d.32.1.2 78151 1l1qA 186 3.69e+01 c.61.1.1 77653 1v58A 241 3.74e+01 1ewiA 114 3.91e+01 1ewiA b.40.4.3 25302 1dxrL 273 3.96e+01 6prcL f.26.1.1 43431 1i8aA 189 3.97e+01 1i82A b.1.9.2 61951