# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1mr7A	209	1.70e+00		b.81.1.3	-4798
1h7nA	342	2.81e+00	1b4kA	c.1.10.3	60726
1ohlA	342	2.90e+00		c.1.10.3	87035
1dbhA	354	9.69e+00	1awe	a.87.1.1	18514
				b.55.1.1	26967
1r7lA	110	1.15e+01			
1uzpA	162	1.19e+01		g.3.11.1	-12511
				g.3.11.1	-12512
				g.23.1.1	-12685
1dxrL	273	1.36e+01	6prcL	f.26.1.1	43431
1eit	37	1.47e+01	1eit	g.3.6.2	44108
1ek9A	428	1.53e+01	1ek9A	f.5.1.1	43809
1auiA	521	1.63e+01	1auiA	d.159.1.3	42085
1kllA	130	1.95e+01		d.32.1.2	72720
1n3oA	252	2.05e+01		b.29.1.1	79967
1ukgA	252	2.15e+01		b.29.1.1	-3390
1dl0A	37	2.29e+01	1dl0A	g.3.6.2	44112
1i7hA	111	2.69e+01		d.15.4.1	71122
1auk	489	2.78e+01	1auk	c.76.1.2	35030
1sfp	114	3.11e+01	1sfp	b.23.1.1	23895
1o2dA	371	3.15e+01		e.22.1.2	86591
1jj2P	95	3.19e+01	1ffkN	b.34.5.1	63101
1s72Q	96	3.23e+01			
1kfwA	435	3.48e+01		c.1.8.5	77376
				d.26.3.1	77377
1g1pA	33	3.59e+01	1g1pA	g.3.6.1	44099
1p49A	562	3.74e+01		c.76.1.2	-8432
1tml	286	3.76e+01	1tml	c.6.1.1	30656
1ekjA	221	3.79e+01	1ekjB	c.53.2.1	33364
1j3mA	129	3.88e+01			
1ewiA	114	3.90e+01	1ewiA	b.40.4.3	25302