# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ks9A	291	2.14e+00		a.100.1.7	68857
				c.2.1.6	68858
1cc1S	283	3.03e+00	2frvA	e.19.1.1	43313
1p97A	114	4.85e+00		unknown_sccs	-10844
1vi7A	217	5.19e+00		unknown_sccs	-9115
				unknown_sccs	-10052
1ohlA	342	5.79e+00		c.1.10.3	87035
1r7lA	110	6.83e+00			
1h7nA	342	7.02e+00	1b4kA	c.1.10.3	60726
1jj2P	95	7.66e+00	1ffkN	b.34.5.1	63101
1s72Q	96	7.86e+00			
1sbxA	106	9.48e+00			
1h2kA	349	9.92e+00		b.82.2.6	76572
1jb9A	316	1.03e+01	1fnc	b.43.4.2	62840
				c.25.1.1	62841
1h9oA	112	1.08e+01	1qadA	d.93.1.1	60837
1uzpA	162	1.11e+01		g.3.11.1	-12511
				g.3.11.1	-12512
				g.23.1.1	-12685
1eit	37	1.19e+01	1eit	g.3.6.2	44108
1rxyA	253	1.22e+01		c.56.2.1	-7834
1dl0A	37	1.23e+01	1dl0A	g.3.6.2	44112
1lx7A	253	1.27e+01		c.56.2.1	74329
1mr7A	209	1.30e+01		b.81.1.3	-4798
1dxrL	273	1.33e+01	6prcL	f.26.1.1	43431
1o4tA	133	1.34e+01		b.82.1.9	86622
1kllA	130	1.38e+01		d.32.1.2	72720
1v5sA	126	1.53e+01			
1ss4A	153	2.04e+01			
1i7hA	111	2.12e+01		d.15.4.1	71122
1qb0A	211	2.18e+01	1c25	c.46.1.1	32699
1dbhA	354	2.26e+01	1awe	a.87.1.1	18514
				b.55.1.1	26967
1rds	105	2.31e+01	9rnt	d.1.1.4	36236
1k87A	669	2.36e+01		a.176.1.1	77286
				c.1.23.2	77287
1qwtA	255	2.36e+01		unknown_sccs	-3329
1euwA	152	2.52e+01	1dupA	b.85.4.1	28349
1h9sA	140	2.54e+01	1b9mA	b.40.6.2	60843
				b.40.6.2	60844
1j3mA	129	2.56e+01			
1i7dA	659	2.56e+01	1d6mA	e.10.1.1	61886
1j58A	385	3.02e+01		b.82.1.2	71531
1bxvA	91	3.11e+01	1aac	b.6.1.1	22875
1qpaA	345	3.50e+01	1arv	a.93.1.1	18585
1v58A	241	3.86e+01			
4ubpA	101	3.98e+01	1ubpA	d.8.1.1	37352
1tyv	542	4.00e+01	1tyv	b.80.1.6	28038