# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1f00I	282	1.72e+00	1f00I	b.1.14.1	22368
				b.1.14.1	22369
				d.169.1.3	42439
1p49A	562	3.39e+00		c.76.1.2	-8432
1vi7A	217	3.60e+00		unknown_sccs	-9115
				unknown_sccs	-10052
1f3vA	179	5.78e+00	1f3vA	d.58.22.1	39382
1p9gA	41	7.98e+00			
1uzpA	162	1.21e+01		g.3.11.1	-12511
				g.3.11.1	-12512
				g.23.1.1	-12685
1he7A	126	1.73e+01	1wwcA	b.1.1.4	60970
1qhxA	178	1.79e+01	1qhsA	c.37.1.3	31936
1m0gA	30	1.84e+01		g.46.1.1	84743
1bea	127	1.86e+01	1bea	a.52.1.2	17826
1iynA	295	2.02e+01		a.93.1.1	-1244
1auk	489	2.32e+01	1auk	c.76.1.2	35030
1v5sA	126	2.47e+01			
1sfp	114	2.61e+01	1sfp	b.23.1.1	23895
1usmA	80	2.72e+01		d.74.1.1	-10334
1josA	128	2.74e+01		d.52.7.1	84191
1pqzA	238	2.78e+01			
1vc4A	254	2.89e+01		c.1.2.4	-5172
1tltA	319	3.01e+01			
1czfA	362	3.12e+01	1czfA	b.80.1.3	28031
1eit	37	3.17e+01	1eit	g.3.6.2	44108
1i7hA	111	3.84e+01		d.15.4.1	71122
1j6rA	214	3.93e+01		d.173.1.2	71598
1l6xB	34	3.95e+01		k.13.1.1	73644
1ug0A	88	3.97e+01