# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ks9A	291	4.29e+00		a.100.1.7	68857
				c.2.1.6	68858
1pqzA	238	6.28e+00			
1mr7A	209	8.90e+00		b.81.1.3	-4798
1h7nA	342	1.06e+01	1b4kA	c.1.10.3	60726
1ohlA	342	1.16e+01		c.1.10.3	87035
1f00I	282	1.83e+01	1f00I	b.1.14.1	22368
				b.1.14.1	22369
				d.169.1.3	42439
1r7lA	110	2.11e+01			
1eit	37	2.14e+01	1eit	g.3.6.2	44108
1dl0A	37	2.24e+01	1dl0A	g.3.6.2	44112
1dbhA	354	2.27e+01	1awe	a.87.1.1	18514
				b.55.1.1	26967
1uzpA	162	2.60e+01		g.3.11.1	-12511
				g.3.11.1	-12512
				g.23.1.1	-12685
1v5sA	126	2.63e+01			
1l1qA	186	2.79e+01		c.61.1.1	77653
1k87A	669	2.99e+01		a.176.1.1	77286
				c.1.23.2	77287
1vi7A	217	3.46e+01		unknown_sccs	-9115
				unknown_sccs	-10052
1hzdA	272	3.52e+01		c.14.1.3	65969
1ud9A	245	3.64e+01			
1qb0A	211	3.72e+01	1c25	c.46.1.1	32699
1kqrA	179	3.74e+01		b.29.1.14	72886
1ekjA	221	3.92e+01	1ekjB	c.53.2.1	33364