# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1mr7A	209	4.64e+00		b.81.1.3	-4798
1r7lA	110	9.50e+00			
1ks9A	291	9.89e+00		a.100.1.7	68857
				c.2.1.6	68858
1dl0A	37	1.02e+01	1dl0A	g.3.6.2	44112
1h7nA	342	1.19e+01	1b4kA	c.1.10.3	60726
1ohlA	342	1.24e+01		c.1.10.3	87035
1pqzA	238	1.47e+01			
1eit	37	1.49e+01	1eit	g.3.6.2	44108
1vi7A	217	1.51e+01		unknown_sccs	-9115
				unknown_sccs	-10052
1i7hA	111	1.74e+01		d.15.4.1	71122
1euwA	152	1.78e+01	1dupA	b.85.4.1	28349
1nbaA	264	1.79e+01	1nbaA	unknown_sccs	31753
1f00I	282	1.87e+01	1f00I	b.1.14.1	22368
				b.1.14.1	22369
				d.169.1.3	42439
1sfp	114	2.15e+01	1sfp	b.23.1.1	23895
1auiA	521	2.20e+01	1auiA	d.159.1.3	42085
1vmoA	163	2.62e+01	1vmoA	b.77.1.1	27974
1nqzA	194	2.83e+01		d.113.1.1	86077
1k87A	669	2.86e+01		a.176.1.1	77286
				c.1.23.2	77287
1p63A	144	3.05e+01		b.42.1.1	-4002
1o7fA	469	3.09e+01		a.4.5.31	81131
				b.82.3.2	81132
				b.82.3.2	81133
1auk	489	3.09e+01	1auk	c.76.1.2	35030
1dbhA	354	3.10e+01	1awe	a.87.1.1	18514
				b.55.1.1	26967
1qfmA	710	3.17e+01	1qfmA	b.69.7.1	27673
				c.69.1.4	34641
1h2wA	710	3.21e+01		b.69.7.1	76596
				c.69.1.4	76597
1bd0A	388	3.32e+01	1bd0A	b.49.2.2	26480
				c.1.6.1	28642
1sftA	388	3.33e+01	1bd0A	b.49.2.2	26482
				c.1.6.1	28644
1kllA	130	3.36e+01		d.32.1.2	72720
1tvxA	75	3.39e+01	1tvxA	d.9.1.1	37441