# List of top-scoring protein chains for t04-100-30-bys hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1mr7A	209	1.56e+00		b.81.1.3	-4798
1ks9A	291	2.43e+00		a.100.1.7	68857
				c.2.1.6	68858
1i7hA	111	4.51e+00		d.15.4.1	71122
1pqzA	238	5.16e+00			
1uzpA	162	7.93e+00		g.3.11.1	-12511
				g.3.11.1	-12512
				g.23.1.1	-12685
1qb0A	211	8.72e+00	1c25	c.46.1.1	32699
1r7lA	110	1.22e+01			
1kllA	130	1.41e+01		d.32.1.2	72720
1ekjA	221	1.87e+01	1ekjB	c.53.2.1	33364
3vub	101	1.89e+01	3vub	b.34.6.1	24613
1g1pA	33	1.90e+01	1g1pA	g.3.6.1	44099
1he7A	126	2.20e+01	1wwcA	b.1.1.4	60970
1jb9A	316	2.64e+01	1fnc	b.43.4.2	62840
				c.25.1.1	62841
1dl0A	37	2.80e+01	1dl0A	g.3.6.2	44112
1je6A	275	2.87e+01		b.1.1.2	71638
				d.19.1.1	71639
1g66A	207	3.05e+01	1bs9	unknown_sccs	31329
1lvmA	229	3.13e+01		b.47.1.3	78243
1v54B	227	3.20e+01		b.6.1.2	-2946
				f.17.2.1	-12243
1eit	37	3.21e+01	1eit	g.3.6.2	44108
1f2rI	100	3.43e+01	1c9fA	d.15.2.1	37641
1bx7	55	3.51e+01	1bx7	g.3.15.1	44355
1mwpA	96	3.56e+01	1mwpA	d.170.2.1	42453
1k87A	669	3.67e+01		a.176.1.1	77286
				c.1.23.2	77287
1h3nA	878	3.72e+01		a.27.1.1	76641
				b.51.1.1	76642
				c.26.1.1	76643
1dbhA	354	3.73e+01	1awe	a.87.1.1	18514
				b.55.1.1	26967
1qlwA	328	3.74e+01	1qlwA	c.69.1.15	34722
1josA	128	3.95e+01		d.52.7.1	84191
1h7nA	342	3.98e+01	1b4kA	c.1.10.3	60726