# List of top-scoring protein chains for t04-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uzpA 162 2.09e+00 g.3.11.1 -12511 g.3.11.1 -12512 g.23.1.1 -12685 1i7hA 111 4.17e+00 d.15.4.1 71122 1kllA 130 4.30e+00 d.32.1.2 72720 1he7A 126 4.68e+00 1wwcA b.1.1.4 60970 1h7nA 342 4.88e+00 1b4kA c.1.10.3 60726 1mr7A 209 4.88e+00 b.81.1.3 -4798 1pztA 286 5.00e+00 c.68.1.2 -8213 1lvmA 229 5.29e+00 b.47.1.3 78243 1ks9A 291 5.47e+00 a.100.1.7 68857 c.2.1.6 68858 1nzoA 363 5.69e+00 b.105.1.1 -2933 e.3.1.1 -11784 1ohlA 342 5.96e+00 c.1.10.3 87035 1bx7 55 6.42e+00 1bx7 g.3.15.1 44355 1fgxA 288 7.09e+00 1fgxA c.68.1.2 34508 1pqzA 238 7.26e+00 1igrA 478 8.70e+00 1igrA c.10.2.5 30877 c.10.2.5 30878 g.3.9.1 44188 1v54B 227 9.18e+00 b.6.1.2 -2946 f.17.2.1 -12243 1p9gA 41 9.45e+00 1r7lA 110 9.74e+00 1sbxA 106 1.05e+01 1nqzA 194 1.12e+01 d.113.1.1 86077 1g1pA 33 1.21e+01 1g1pA g.3.6.1 44099 1extA 162 1.23e+01 1extA g.24.1.1 44900 g.24.1.1 44901 g.24.1.1 44902 1g66A 207 1.41e+01 1bs9 unknown_sccs 31329 1iibA 106 1.47e+01 1iibA c.44.2.1 32648 1grx 85 1.62e+01 1kte c.47.1.1 32766 1nmmB 286 1.64e+01 c.68.1.2 80662 1hzdA 272 1.64e+01 c.14.1.3 65969 3vub 101 1.85e+01 3vub b.34.6.1 24613 1jb9A 316 1.86e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1oi1A 221 1.91e+01 b.34.9.3 87037 b.34.9.3 87038 1mldA 314 2.00e+01 2cmd c.2.1.5 30122 d.162.1.1 42089 1cz4A 185 2.00e+01 1cz4A b.52.2.3 26934 d.31.1.1 38468 2if1 126 2.20e+01 2if1 d.64.1.1 39547 3pviA 157 2.26e+01 3pviA c.52.1.6 33300 1nj4A 363 2.36e+01 b.105.1.1 80545 e.3.1.1 80546 1czfA 362 2.37e+01 1czfA b.80.1.3 28031 1qb0A 211 2.38e+01 1c25 c.46.1.1 32699 1p1p 26 2.56e+01 j.30.1.3 46227 1p97A 114 2.86e+01 unknown_sccs -10844 1dl0A 37 2.92e+01 1dl0A g.3.6.2 44112 1vib 55 3.29e+01 1vib g.2.2.1 43999 1m56D 51 3.30e+01 f.23.8.1 74475 1svb 395 3.41e+01 1svb b.1.18.4 21814 f.10.1.1 43827 1qlwA 328 3.51e+01 1qlwA c.69.1.15 34722 1h7eA 245 3.65e+01 c.68.1.13 60717 1vjqA 79 3.78e+01 unknown_sccs -13478 1dceA 567 3.99e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867