# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1p49A	562	8.58e-01		c.76.1.2	-8432
1v5sA	126	1.17e+00			
3pviA	157	7.35e+00	3pviA	c.52.1.6	33300
1josA	128	7.55e+00		d.52.7.1	84191
1f00I	282	7.93e+00	1f00I	b.1.14.1	22368
				b.1.14.1	22369
				d.169.1.3	42439
1uzpA	162	8.88e+00		g.3.11.1	-12511
				g.3.11.1	-12512
				g.23.1.1	-12685
1p9gA	41	9.23e+00			
1auk	489	1.04e+01	1auk	c.76.1.2	35030
1qhxA	178	1.09e+01	1qhsA	c.37.1.3	31936
1qi7A	253	1.19e+01	1qi7A	d.165.1.1	42210
1he7A	126	1.28e+01	1wwcA	b.1.1.4	60970
1vi7A	217	1.38e+01		unknown_sccs	-9115
				unknown_sccs	-10052
1i7hA	111	1.43e+01		d.15.4.1	71122
1nqzA	194	1.49e+01		d.113.1.1	86077
3ezmA	101	1.54e+01	3ezmA	b.89.1.1	28395
1ug0A	88	1.69e+01			
1usmA	80	2.02e+01		d.74.1.1	-10334
1cc1S	283	2.23e+01	2frvA	e.19.1.1	43313
1jmcA	246	2.28e+01	1jmcA	b.40.4.3	25300
				b.40.4.3	25301
1b2pA	119	2.29e+01	1b2pA	b.78.1.1	27998
1pqzA	238	2.32e+01			
1f3vA	179	2.48e+01	1f3vA	d.58.22.1	39382
1sr7A	259	2.48e+01			
1lvmA	229	2.59e+01		b.47.1.3	78243
1a28A	256	2.70e+01	1a28A	a.123.1.1	19290
1pd21	199	2.80e+01	1pd21		
3vub	101	2.89e+01	3vub	b.34.6.1	24613
1s5aA	150	3.05e+01		unknown_sccs	-9300
1bxvA	91	3.07e+01	1aac	b.6.1.1	22875
1j6rA	214	3.36e+01		d.173.1.2	71598
1dj0A	264	3.46e+01	1dj0A	unknown_sccs	-10141
3lzt	129	3.58e+01	3lzt	d.2.1.2	36245
1s6bA	119	3.70e+01		a.133.1.2	-1953
1sqnA	261	3.72e+01			
1iw7E	99	3.75e+01		a.143.1.1	71476
1l6xB	34	3.77e+01		k.13.1.1	73644
1g1pA	33	3.77e+01	1g1pA	g.3.6.1	44099
1srvA	145	3.79e+01	1derA	c.8.5.1	30817