# List of top-scoring protein chains for T0261.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rhi3 236 1.51e+00 1aym3 1q77A 138 3.44e+00 c.26.2.4 -6639 1o4tA 133 4.76e+00 b.82.1.9 86622 1e6eB 128 5.05e+00 1ayfA d.15.4.1 59300 1l6uA 128 5.08e+00 d.15.4.1 73630 1k38A 254 5.42e+00 e.3.1.1 84303 1cjeA 127 5.45e+00 1ayfA d.15.4.1 37686 1vhcA 224 6.16e+00 c.1.10.1 -5488 1c1eH 219 6.88e+00 1igtB b.1.1.1 20239 b.1.1.2 21251 1uby 367 7.03e+00 1uby a.128.1.1 19435 1hqmC 1119 7.22e+00 i.8.1.1 45974 1t2eA 322 8.27e+00 c.2.1.5 -5921 d.162.1.1 -11488 1t2dA 322 8.28e+00 c.2.1.5 -5920 d.162.1.1 -11487 1ceqA 316 8.54e+00 1ceqA c.2.1.5 30163 d.162.1.1 42130 1ru3A 732 8.55e+00 e.26.1.3 -12021 1csh 435 8.55e+00 1csh a.103.1.1 18880 1al6 437 8.56e+00 1csh a.103.1.1 18885 1i5eA 209 9.59e+00 c.61.1.1 71116 1mxsA 225 9.74e+00 c.1.10.1 -5485 1ayfA 105 1.02e+01 1ayfA d.15.4.1 37684 1ncqC 236 1.10e+01 b.121.4.1 -2986 1oc4A 322 1.13e+01 c.2.1.5 -5923 d.162.1.1 -11490 1j8mF 297 1.14e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1uxxX 133 1.17e+01 b.18.1.10 -3107 1jpwA 540 1.23e+01 a.118.1.1 67059 1g3jA 532 1.26e+01 3bct a.118.1.1 19114 1qz7A 533 1.26e+01 a.118.1.1 -1542 1o54A 277 1.26e+01 c.66.1.13 -8095 1i7wA 538 1.31e+01 3bct a.118.1.1 61909 1sq9A 397 1.32e+01 1fps 348 1.32e+01 1uby a.128.1.1 19436 1j8yF 297 1.34e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1jdhA 529 1.34e+01 a.118.1.1 66549 1iw7C 1119 1.36e+01 e.29.1.1 71474 1se8A 301 1.36e+01 1vpe 398 1.37e+01 16pk c.86.1.1 35453 1bouB 302 1.40e+01 1bouB c.56.6.1 33859 1rblI 109 1.41e+01 1ubx 367 1.44e+01 1uby a.128.1.1 19439 1r61A 207 1.45e+01 unknown_sccs -6086 1fa0A 537 1.48e+01 1fa0B a.160.1.1 75837 d.218.1.3 75838 d.58.16.1 39335 1we3O 100 1.54e+01 1h80A 464 1.63e+01 b.80.1.8 65714 1xxaA 78 1.66e+01 1xxaA d.74.2.1 39700 1pbtA 244 1.68e+01 unknown_sccs -6866 1q4kA 259 1.76e+01 unknown_sccs -9459 unknown_sccs -9460 1umwA 237 1.77e+01 unknown_sccs -9455 unknown_sccs -9456 1mrzA 293 1.80e+01 b.43.5.1 -4048 c.26.1.3 -6616 1smeA 329 1.89e+01 1smrA b.50.1.2 26885 1lf4A 331 1.89e+01 b.50.1.2 77916 1dv4E 145 1.95e+01 i.1.1.3 45875 1eg0B 148 1.96e+01 1pkp i.1.1.1 45808 1lf2A 331 1.96e+01 b.50.1.2 77914 1pkp 150 1.98e+01 1pkp d.14.1.1 37551 d.50.1.2 38787 7odcA 424 2.02e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1k6mA 432 2.03e+01 c.37.1.7 77275 c.60.1.4 77276 1f5xA 208 2.10e+01 1f5xA a.87.1.1 18516 1nktA 922 2.13e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 2tpt 440 2.17e+01 1brwA a.46.2.1 17759 c.27.1.1 31623 d.41.3.1 38621 1l1pA 106 2.19e+01 d.26.1.1 84518 1kb0A 677 2.31e+01 a.3.1.6 68378 b.70.1.1 68379 1frfS 264 2.35e+01 2frvA e.19.1.1 43312 1mxhA 276 2.35e+01 c.2.1.2 -5803 1pfzA 380 2.39e+01 1smrA b.50.1.2 26881 1dqaA 467 2.53e+01 1dqaA d.58.20.1 39364 d.179.1.1 42585 1h0cA 392 2.53e+01 c.67.1.3 83424 1d7kA 421 2.54e+01 7odcA b.49.2.3 26486 c.1.6.1 28648 1t2fA 333 2.55e+01 c.2.1.5 -5912 d.162.1.1 -11479 1i0zA 333 2.55e+01 3ldh c.2.1.5 61495 d.162.1.1 61496 1j04A 392 2.55e+01 c.67.1.3 -8171 1aj8A 371 2.72e+01 1aj8A a.103.1.1 18900 1ldg 316 2.76e+01 1ceqA c.2.1.5 30165 d.162.1.1 42132 1jvnA 555 2.79e+01 c.1.2.1 67355 c.23.16.1 67356 1bpyA 335 2.89e+01 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1lt8A 406 2.97e+01 c.1.26.1 78186 1hpcA 131 2.98e+01 1htp b.84.1.1 28221 1f82A 424 3.09e+01 1f82A d.92.1.7 40307 1f83A 425 3.09e+01 1f82A d.92.1.7 40306 1od0A 468 3.10e+01 c.1.8.4 86818 1mkhA 107 3.13e+01 b.40.4.4 79238 1ox6A 555 3.15e+01 c.1.2.1 87505 c.23.16.1 87506 1m65A 245 3.20e+01 c.6.3.1 84847 1i10A 331 3.31e+01 3ldh c.2.1.5 61499 d.162.1.1 61500 1po0A 751 3.47e+01 f.4.3.3 -12363 1cfzA 162 3.48e+01 1cfzA c.56.1.1 33754 1p8lA 304 3.49e+01 b.40.4.6 -3951 d.142.2.1 -11247 1kmoA 774 3.58e+01 f.4.3.3 72753 1ldm 329 3.58e+01 3ldh c.2.1.5 30160 d.162.1.1 42127 6ldh 330 3.58e+01 3ldh c.2.1.5 30161 d.162.1.1 42128 1q8gA 166 3.68e+01 1gwjA 377 3.75e+01 c.1.4.1 70671 1gnxA 479 3.78e+01 c.1.8.4 76241 2cbf 234 3.86e+01 1cbf c.90.1.1 35588 1lldA 319 3.91e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1kijA 390 3.92e+01 d.14.1.3 72514 d.122.1.2 72515