# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1przA 252 1.23e+00 unknown_sccs -10158 1v9fA 325 1.40e+00 1cbf 285 1.61e+00 1cbf c.90.1.1 35587 2cbf 234 1.93e+00 1cbf c.90.1.1 35588 1i8dA 213 2.48e+00 b.43.4.3 61953 b.43.4.3 61954 1gmuA 143 2.50e+00 b.107.1.1 65335 d.58.38.1 65336 1v9kA 228 2.62e+00 1eb0A 147 2.66e+00 b.107.1.1 64890 d.58.38.1 64891 1gqyA 475 3.08e+00 c.5.1.1 83305 c.59.1.1 83306 c.72.2.1 83307 1earA 147 3.12e+00 b.107.1.1 64875 d.58.38.1 64876 1gmwA 143 3.83e+00 b.107.1.1 65347 d.58.38.1 65348 1jvnA 555 4.41e+00 c.1.2.1 67355 c.23.16.1 67356 1o54A 277 6.04e+00 c.66.1.13 -8095 1qpoA 284 6.41e+00 1qpoA c.1.17.1 29561 d.41.2.1 38597 1iw7C 1119 6.45e+00 e.29.1.1 71474 1s1pA 331 6.87e+00 c.1.7.1 -5240 1j96A 323 6.88e+00 c.1.7.1 71616 1p3dA 475 6.89e+00 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1kb0A 677 6.96e+00 a.3.1.6 68378 b.70.1.1 68379 1d7kA 421 7.65e+00 7odcA b.49.2.3 26486 c.1.6.1 28648 1dryA 324 9.55e+00 1drtA b.82.2.2 28128 1g0oA 283 1.00e+01 1ybvA c.2.1.2 60181 1drtA 324 1.05e+01 1drtA b.82.2.2 28130 1c0pA 363 1.08e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1ds1A 324 1.09e+01 1drtA b.82.2.2 28127 16pk 415 1.12e+01 16pk c.86.1.1 35454 7odcA 424 1.13e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1lrzA 426 1.22e+01 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1pil 112 1.24e+01 2pii d.58.5.1 39072 1eulA 994 1.26e+01 1eulA 1ybvA 283 1.27e+01 1ybvA c.2.1.2 29948 1t4bA 367 1.36e+01 2pii 112 1.43e+01 2pii d.58.5.1 39071 1caxB 184 1.44e+01 1caxB b.82.1.2 28105 1j3vA 289 1.48e+01 a.100.1.1 -1303 c.2.1.6 -5947 1lt8A 406 1.56e+01 c.1.26.1 78186 1iqvA 218 1.58e+01 1rss a.75.1.1 62661 1mugA 168 1.63e+01 1mugA c.18.1.2 31030 1rqpA 299 1.66e+01 unknown_sccs -4411 unknown_sccs -7908 1mb4A 370 1.74e+01 c.2.1.3 78908 d.81.1.1 78909 1uxxX 133 1.74e+01 b.18.1.10 -3107 1gmmA 133 1.75e+01 b.18.1.10 65314 1h3nA 878 1.79e+01 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643 1ekqA 272 1.83e+01 1c3qA c.72.1.2 34941 1eqcA 394 1.83e+01 1cz1A c.1.8.3 28811 1nhs 447 1.90e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1cawB 184 1.93e+01 1caxB b.82.1.2 28113 1cz1A 394 1.96e+01 1cz1A c.1.8.3 28839 1gthD 1025 1.99e+01 a.1.2.2 70498 c.1.4.1 70499 c.3.1.1 70500 c.4.1.1 70501 d.58.1.5 70502 1cqzA 554 1.99e+01 1cr6B c.108.1.2 43339 c.69.1.11 34689 1j0hA 588 2.08e+01 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1gaxA 862 2.20e+01 1gaxA a.2.7.3 75842 a.27.1.1 75843 b.51.1.1 26893 c.26.1.1 31595 1ujnA 348 2.20e+01 e.22.1.1 -11998 1cauB 184 2.23e+01 1caxB b.82.1.2 28103 1zfjA 491 2.33e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1tidB 119 2.40e+01 1sxjE 354 2.43e+01 1su4A 994 2.43e+01 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1qopA 268 2.43e+01 2tysA c.1.2.4 28570 1vhcA 224 2.52e+01 c.1.10.1 -5488 1erjA 393 2.57e+01 1erjA b.69.4.1 27660 1nhp 447 2.59e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1a7s 221 2.71e+01 1a7s b.47.1.2 26284 1q77A 138 2.78e+01 c.26.2.4 -6639 1geqA 248 2.83e+01 2tysA c.1.2.4 28589 1llwA 1520 2.84e+01 b.80.4.1 74017 c.1.4.1 74018 d.153.1.1 74019 1iv0A 98 2.94e+01 unknown_sccs -7667 1fjgQ 105 3.00e+01 1fjfQ b.40.4.5 25352 1brmA 367 3.01e+01 1brmA c.2.1.3 30030 d.81.1.1 39945 1gvhA 396 3.01e+01 a.1.1.2 70601 b.43.4.2 70602 c.25.1.5 70603 1nktA 922 3.04e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1dbqA 289 3.08e+01 1qpzA c.93.1.1 35666 1qg0A 308 3.09e+01 1fnc b.43.4.2 25639 c.25.1.1 31529 1b73A 254 3.10e+01 1b74A c.78.2.1 35266 c.78.2.1 35267 1juhA 350 3.15e+01 b.82.1.5 71884 1yagA 375 3.16e+01 1yagA c.55.1.1 33449 c.55.1.1 33450 1f20A 435 3.18e+01 b.43.4.1 64932 c.25.1.4 64933 1joa 447 3.25e+01 1nhp c.3.1.5 30563 c.3.1.5 30564 d.87.1.1 40203 1iwmA 186 3.40e+01 b.125.1.2 83758 1vjrA 271 3.56e+01 unknown_sccs -6853 1jr2A 286 3.56e+01 c.113.1.1 67111 1gkpA 458 3.57e+01 b.92.1.3 70231 c.1.9.6 70232 1h75A 81 3.69e+01 1h75A c.47.1.1 60716 1uz5A 402 3.73e+01 b.85.6.1 -5029 b.103.1.1 -5069 c.57.1.2 -7902 1e4fT 419 3.89e+01 1e4fT c.55.1.1 33453 c.55.1.1 33454 1dqsA 393 3.92e+01 1dqsA e.22.1.1 43347 1tpt 440 3.96e+01 1brwA a.46.2.1 17763 c.27.1.1 31627 d.41.3.1 38625