# This file is the result of combining several RDB files, specifically # T0261.t04.dssp-ebghstl.rdb (weight 1.53986) # T0261.t04.stride-ebghtl.rdb (weight 1.24869) # T0261.t04.str2.rdb (weight 1.54758) # T0261.t04.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0261.t04.dssp-ebghstl.rdb # ============================================ # TARGET T0261 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0261.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.2898 # # ============================================ # Comments from T0261.t04.stride-ebghtl.rdb # ============================================ # TARGET T0261 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0261.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.2898 # # ============================================ # Comments from T0261.t04.str2.rdb # ============================================ # TARGET T0261 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0261.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.2898 # # ============================================ # Comments from T0261.t04.alpha.rdb # ============================================ # TARGET T0261 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0261.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.2898 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.0837 0.0609 0.8555 2 E 0.1013 0.1088 0.7900 3 G 0.1474 0.0992 0.7535 4 L 0.1550 0.1661 0.6789 5 E 0.1345 0.2463 0.6193 6 A 0.1982 0.3060 0.4959 7 Y 0.2925 0.1320 0.5756 8 D 0.2793 0.0866 0.6341 9 Y 0.3052 0.0480 0.6469 10 H 0.2668 0.0291 0.7041 11 L 0.1489 0.0105 0.8406 12 P 0.0675 0.0118 0.9207 13 P 0.0059 0.8326 0.1615 14 E 0.0074 0.8828 0.1099 15 Q 0.0126 0.8928 0.0946 16 I 0.0487 0.8210 0.1303 17 A 0.0733 0.7118 0.2149 18 Q 0.0789 0.5410 0.3801 19 E 0.0864 0.2167 0.6969 20 G 0.0617 0.1201 0.8182 21 V 0.0833 0.0678 0.8489 22 E 0.0820 0.0321 0.8859 23 P 0.0827 0.1273 0.7901 24 R 0.0735 0.2593 0.6671 25 D 0.0819 0.2974 0.6207 26 M 0.0914 0.4114 0.4973 27 A 0.2991 0.1838 0.5171 28 R 0.4458 0.1352 0.4190 29 L 0.7763 0.0495 0.1742 30 M 0.8606 0.0254 0.1140 31 V 0.8909 0.0137 0.0954 32 V 0.8416 0.0164 0.1420 33 Y 0.5712 0.0184 0.4104 34 R 0.1847 0.0635 0.7518 35 E 0.0749 0.0645 0.8606 36 G 0.0788 0.0385 0.8828 37 P 0.1291 0.0809 0.7900 38 F 0.3907 0.0996 0.5098 39 R 0.5097 0.1200 0.3703 40 V 0.5154 0.1635 0.3211 41 A 0.4002 0.2410 0.3588 42 H 0.2311 0.3306 0.4383 43 K 0.2048 0.3459 0.4493 44 R 0.2209 0.3717 0.4074 45 V 0.2151 0.4791 0.3058 46 R 0.1748 0.4283 0.3969 47 D 0.1197 0.4295 0.4509 48 L 0.0383 0.6906 0.2711 49 P 0.0134 0.8586 0.1280 50 E 0.0105 0.8290 0.1605 51 F 0.0344 0.6515 0.3141 52 L 0.1406 0.1354 0.7240 53 R 0.0559 0.0384 0.9057 54 P 0.0272 0.0769 0.8958 55 G 0.0276 0.0400 0.9324 56 D 0.2342 0.0154 0.7505 57 V 0.8282 0.0043 0.1675 58 L 0.9116 0.0050 0.0835 59 V 0.9224 0.0053 0.0722 60 F 0.8541 0.0127 0.1332 61 N 0.4663 0.0293 0.5045 62 E 0.1942 0.0649 0.7409 63 S 0.2272 0.0723 0.7005 64 K 0.4393 0.0740 0.4867 65 V 0.5289 0.0422 0.4288 66 I 0.5771 0.0455 0.3774 67 P 0.5739 0.0617 0.3645 68 A 0.5735 0.0861 0.3403 69 R 0.7494 0.0639 0.1867 70 L 0.7999 0.0507 0.1494 71 L 0.7983 0.0410 0.1606 72 A 0.7952 0.0221 0.1827 73 R 0.7907 0.0217 0.1876 74 K 0.5238 0.0182 0.4580 75 P 0.1791 0.0637 0.7572 76 T 0.0915 0.0491 0.8594 77 G 0.0720 0.0413 0.8867 78 G 0.1578 0.0352 0.8071 79 K 0.6970 0.0186 0.2844 80 V 0.8868 0.0046 0.1086 81 E 0.9156 0.0056 0.0787 82 I 0.9302 0.0033 0.0665 83 L 0.9266 0.0038 0.0696 84 L 0.9172 0.0053 0.0774 85 V 0.8510 0.0151 0.1339 86 R 0.7392 0.0244 0.2364 87 E 0.5522 0.0520 0.3958 88 R 0.2665 0.0548 0.6786 89 S 0.0972 0.0276 0.8752 90 P 0.0233 0.1210 0.8557 91 G 0.0401 0.0737 0.8862 92 L 0.3785 0.0781 0.5434 93 W 0.6330 0.0545 0.3125 94 E 0.8265 0.0436 0.1300 95 A 0.8536 0.0403 0.1061 96 L 0.8458 0.0337 0.1205 97 L 0.7095 0.0393 0.2511 98 G 0.3202 0.0352 0.6447 99 P 0.1323 0.2317 0.6359 100 A 0.0685 0.3509 0.5806 101 R 0.1016 0.2234 0.6751 102 K 0.1661 0.0659 0.7680 103 A 0.1205 0.0142 0.8653 104 P 0.0746 0.0169 0.9085 105 P 0.0410 0.0755 0.8835 106 G 0.0572 0.0635 0.8793 107 T 0.3297 0.0408 0.6295 108 R 0.7528 0.0191 0.2281 109 L 0.8404 0.0220 0.1376 110 L 0.8346 0.0277 0.1378 111 L 0.7207 0.0247 0.2546 112 L 0.4415 0.0284 0.5301 113 S 0.1919 0.0217 0.7863 114 P 0.0672 0.1983 0.7345 115 K 0.0489 0.3168 0.6343 116 D 0.0784 0.3337 0.5880 117 L 0.1337 0.1892 0.6771 118 A 0.1313 0.0723 0.7964 119 P 0.1479 0.0707 0.7815 120 V 0.1188 0.0580 0.8233 121 P 0.0911 0.1267 0.7822 122 G 0.1861 0.1078 0.7060 123 L 0.5312 0.0371 0.4317 124 Q 0.7313 0.0233 0.2454 125 A 0.8553 0.0104 0.1343 126 E 0.8963 0.0097 0.0940 127 V 0.9057 0.0106 0.0837 128 V 0.8635 0.0189 0.1176 129 A 0.8501 0.0129 0.1370 130 V 0.7677 0.0407 0.1916 131 E 0.4718 0.0701 0.4581 132 E 0.2615 0.1236 0.6149 133 D 0.0980 0.0473 0.8547 134 G 0.1879 0.0317 0.7804 135 V 0.6570 0.0074 0.3356 136 R 0.8641 0.0055 0.1304 137 L 0.9102 0.0045 0.0853 138 L 0.9005 0.0072 0.0923 139 R 0.8482 0.0118 0.1400 140 F 0.5558 0.0337 0.4105 141 Q 0.1316 0.0753 0.7931 142 G 0.0478 0.2449 0.7073 143 D 0.0749 0.5733 0.3518 144 L 0.0211 0.8879 0.0910 145 V 0.0102 0.9335 0.0562 146 A 0.0065 0.9447 0.0488 147 H 0.0059 0.9503 0.0438 148 L 0.0068 0.9411 0.0521 149 E 0.0066 0.9246 0.0688 150 E 0.0086 0.8548 0.1366 151 V 0.0465 0.5588 0.3946 152 G 0.0380 0.0804 0.8816 153 E 0.0909 0.0568 0.8523 154 V 0.1433 0.0224 0.8343 155 P 0.1187 0.0216 0.8597 156 L 0.0833 0.0212 0.8955 157 P 0.0773 0.0447 0.8780 158 P 0.0671 0.2147 0.7182 159 Y 0.1665 0.2674 0.5660 160 I 0.2733 0.1702 0.5565 161 K 0.1771 0.1423 0.6806 162 A 0.1179 0.1199 0.7622 163 K 0.1079 0.0634 0.8287 164 I 0.1071 0.0163 0.8766 165 P 0.0820 0.0140 0.9040 166 M 0.0482 0.4148 0.5370 167 E 0.0863 0.4040 0.5098 168 R 0.2242 0.3578 0.4181 169 Y 0.5321 0.1427 0.3252 170 Q 0.6754 0.0957 0.2289 171 T 0.7541 0.1004 0.1455 172 V 0.6892 0.1464 0.1644 173 Y 0.6318 0.1391 0.2291 174 A 0.5029 0.0906 0.4065 175 R 0.2670 0.0817 0.6513 176 R 0.1312 0.0265 0.8423 177 P 0.0573 0.1204 0.8224 178 G 0.0822 0.0882 0.8296 179 S 0.3042 0.1050 0.5907 180 V 0.5312 0.0986 0.3702 181 A 0.5707 0.0925 0.3368 182 A 0.4550 0.0957 0.4492 183 P 0.3468 0.1714 0.4818 184 T 0.3364 0.1786 0.4850 185 A 0.2489 0.2211 0.5300 186 G 0.2307 0.1925 0.5768 187 L 0.2569 0.1959 0.5472 188 H 0.2384 0.0992 0.6624 189 F 0.1588 0.0360 0.8052 190 T 0.0600 0.0263 0.9137 191 P 0.0049 0.9477 0.0474 192 E 0.0047 0.9581 0.0372 193 L 0.0048 0.9576 0.0376 194 L 0.0047 0.9604 0.0349 195 E 0.0046 0.9595 0.0358 196 R 0.0046 0.9610 0.0344 197 L 0.0047 0.9608 0.0345 198 R 0.0048 0.9539 0.0413 199 E 0.0055 0.9339 0.0606 200 M 0.0389 0.4133 0.5477 201 G 0.0425 0.0173 0.9402 202 V 0.0925 0.0121 0.8954 203 E 0.5171 0.0136 0.4693 204 L 0.8432 0.0083 0.1485 205 R 0.8716 0.0075 0.1209 206 F 0.9204 0.0036 0.0760 207 L 0.9166 0.0039 0.0794 208 T 0.9152 0.0042 0.0807 209 L 0.8617 0.0095 0.1288 210 H 0.7225 0.0089 0.2686 211 V 0.4579 0.0307 0.5114 212 G 0.2165 0.0266 0.7569 213 P 0.0967 0.1097 0.7935 214 G 0.1246 0.1040 0.7714 215 T 0.2939 0.0840 0.6220 216 F 0.4135 0.0681 0.5184 217 R 0.5154 0.0624 0.4222 218 P 0.5527 0.0611 0.3862 219 V 0.4051 0.0805 0.5144 220 K 0.2869 0.0578 0.6553 221 G 0.1346 0.0320 0.8334 222 D 0.1093 0.0141 0.8765 223 P 0.0235 0.5240 0.4525 224 E 0.0240 0.5102 0.4658 225 K 0.0449 0.5561 0.3990 226 H 0.1377 0.3166 0.5457 227 E 0.1890 0.2362 0.5747 228 M 0.1531 0.2433 0.6036 229 H 0.1297 0.1325 0.7378 230 A 0.1009 0.1820 0.7171 231 E 0.1466 0.1052 0.7482 232 P 0.2194 0.1181 0.6625 233 Y 0.3276 0.0803 0.5921 234 A 0.3934 0.0528 0.5538 235 I 0.1610 0.0168 0.8221 236 P 0.0728 0.0276 0.8997 237 E 0.0050 0.9440 0.0510 238 E 0.0048 0.9550 0.0403 239 V 0.0051 0.9525 0.0425 240 A 0.0047 0.9605 0.0348 241 E 0.0046 0.9606 0.0348 242 A 0.0047 0.9594 0.0360 243 V 0.0047 0.9553 0.0400 244 N 0.0047 0.9524 0.0429 245 R 0.0048 0.9509 0.0442 246 A 0.0057 0.9464 0.0479 247 K 0.0069 0.9215 0.0716 248 A 0.0087 0.8375 0.1538 249 E 0.0401 0.3110 0.6489 250 G 0.0369 0.0256 0.9375 251 R 0.0796 0.0104 0.9100 252 R 0.5887 0.0044 0.4069 253 V 0.9133 0.0034 0.0833 254 V 0.9292 0.0034 0.0674 255 A 0.9188 0.0037 0.0774 256 V 0.7779 0.0209 0.2012 257 G 0.3222 0.0354 0.6424 258 T 0.1763 0.1949 0.6289 259 T 0.1552 0.5440 0.3008 260 V 0.1551 0.7455 0.0993 261 V 0.0465 0.8974 0.0561 262 R 0.0297 0.9190 0.0513 263 A 0.0430 0.8998 0.0571 264 L 0.0264 0.9047 0.0689 265 E 0.0345 0.8781 0.0874 266 S 0.0318 0.8542 0.1139 267 A 0.0345 0.8225 0.1430 268 Y 0.0617 0.6810 0.2573 269 R 0.0824 0.4697 0.4479 270 E 0.0489 0.2262 0.7249 271 G 0.0406 0.0653 0.8941 272 V 0.1225 0.0392 0.8383 273 G 0.3873 0.0341 0.5786 274 V 0.6446 0.0224 0.3331 275 V 0.5930 0.0195 0.3875 276 A 0.4746 0.0604 0.4650 277 G 0.2667 0.0512 0.6821 278 E 0.2070 0.0729 0.7201 279 G 0.1599 0.0705 0.7695 280 E 0.2999 0.0628 0.6373 281 T 0.5305 0.0265 0.4430 282 R 0.6064 0.0252 0.3685 283 L 0.8764 0.0067 0.1169 284 F 0.9178 0.0042 0.0780 285 I 0.9024 0.0040 0.0936 286 R 0.5980 0.0095 0.3925 287 P 0.1833 0.0296 0.7872 288 P 0.0770 0.1154 0.8076 289 Y 0.1279 0.1187 0.7533 290 T 0.2124 0.1930 0.5946 291 F 0.2876 0.3284 0.3840 292 K 0.4339 0.3447 0.2214 293 V 0.3481 0.5318 0.1201 294 V 0.3702 0.4685 0.1613 295 D 0.3248 0.4947 0.1805 296 A 0.3445 0.4969 0.1585 297 L 0.3787 0.4398 0.1815 298 F 0.3730 0.3632 0.2638 299 T 0.2429 0.3045 0.4525 300 N 0.1103 0.2047 0.6851 301 F 0.0682 0.2113 0.7204 302 H 0.0822 0.1786 0.7391 303 L 0.0500 0.2133 0.7367 304 P 0.0248 0.3872 0.5880 305 R 0.0090 0.8541 0.1369 306 S 0.0067 0.9318 0.0615 307 T 0.0048 0.9547 0.0405 308 L 0.0047 0.9599 0.0354 309 L 0.0047 0.9603 0.0350 310 M 0.0046 0.9612 0.0341 311 L 0.0047 0.9610 0.0343 312 V 0.0047 0.9601 0.0352 313 A 0.0047 0.9575 0.0378 314 A 0.0052 0.9408 0.0540 315 F 0.0063 0.9015 0.0922 316 L 0.0282 0.7436 0.2282 317 G 0.0224 0.4899 0.4876 318 R 0.0129 0.8067 0.1805 319 E 0.0068 0.9272 0.0660 320 R 0.0075 0.9288 0.0637 321 T 0.0054 0.9433 0.0513 322 L 0.0047 0.9574 0.0379 323 E 0.0047 0.9594 0.0359 324 A 0.0047 0.9601 0.0353 325 Y 0.0047 0.9606 0.0347 326 R 0.0047 0.9608 0.0345 327 L 0.0047 0.9597 0.0356 328 A 0.0047 0.9581 0.0372 329 V 0.0056 0.9460 0.0484 330 A 0.0067 0.9121 0.0812 331 E 0.0390 0.5153 0.4457 332 G 0.0337 0.0787 0.8876 333 Y 0.1094 0.0219 0.8687 334 R 0.3904 0.0295 0.5800 335 F 0.7151 0.0210 0.2639 336 Y 0.6733 0.0321 0.2946 337 S 0.6016 0.0377 0.3607 338 L 0.2963 0.1926 0.5112 339 G 0.2337 0.1684 0.5979 340 D 0.2898 0.2208 0.4894 341 A 0.4018 0.2504 0.3478 342 M 0.5973 0.1745 0.2283 343 L 0.7003 0.1150 0.1847 344 I 0.5584 0.0827 0.3589 345 L 0.2158 0.0484 0.7359