# List of top-scoring protein chains for T0261.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rhi3 236 2.24e+00 1aym3 1o54A 277 3.10e+00 c.66.1.13 -8095 1vpe 398 3.44e+00 16pk c.86.1.1 35453 1o4tA 133 3.53e+00 b.82.1.9 86622 1sq9A 397 3.56e+00 1vhcA 224 4.14e+00 c.1.10.1 -5488 1l6uA 128 4.28e+00 d.15.4.1 73630 1e6eB 128 4.28e+00 1ayfA d.15.4.1 59300 1cjeA 127 4.48e+00 1ayfA d.15.4.1 37686 1k38A 254 4.74e+00 e.3.1.1 84303 1q77A 138 4.83e+00 c.26.2.4 -6639 1kb0A 677 5.29e+00 a.3.1.6 68378 b.70.1.1 68379 1c1eH 219 5.68e+00 1igtB b.1.1.1 20239 b.1.1.2 21251 1smeA 329 5.78e+00 1smrA b.50.1.2 26885 1lf4A 331 5.81e+00 b.50.1.2 77916 1bouB 302 5.84e+00 1bouB c.56.6.1 33859 1i5eA 209 5.91e+00 c.61.1.1 71116 1lf2A 331 6.24e+00 b.50.1.2 77914 1pfzA 380 6.70e+00 1smrA b.50.1.2 26881 1uby 367 7.09e+00 1uby a.128.1.1 19435 1pii 452 7.16e+00 1pii c.1.2.4 28559 c.1.2.4 28563 1bg4 302 7.32e+00 1taxA c.1.8.3 28806 1ayfA 105 7.36e+00 1ayfA d.15.4.1 37684 1jpwA 540 7.45e+00 a.118.1.1 67059 1g3jA 532 7.67e+00 3bct a.118.1.1 19114 1qz7A 533 7.67e+00 a.118.1.1 -1542 1csh 435 7.95e+00 1csh a.103.1.1 18880 1pmi 440 7.96e+00 1pmi b.82.1.3 28114 1al6 437 7.96e+00 1csh a.103.1.1 18885 1i7wA 538 8.01e+00 3bct a.118.1.1 61909 1jdhA 529 8.15e+00 a.118.1.1 66549 1eexA 554 8.69e+00 1dioA c.1.19.3 29650 1ru3A 732 9.03e+00 e.26.1.3 -12021 1uxxX 133 9.09e+00 b.18.1.10 -3107 1mrzA 293 9.22e+00 b.43.5.1 -4048 c.26.1.3 -6616 1t2eA 322 9.60e+00 c.2.1.5 -5921 d.162.1.1 -11488 1t2dA 322 9.68e+00 c.2.1.5 -5920 d.162.1.1 -11487 1r61A 207 9.88e+00 unknown_sccs -6086 1mxhA 276 9.91e+00 c.2.1.2 -5803 1ceqA 316 9.91e+00 1ceqA c.2.1.5 30163 d.162.1.1 42130 1d9xA 658 1.08e+01 1d2mA c.37.1.19 32419 c.37.1.19 32420 1oc4A 322 1.08e+01 c.2.1.5 -5923 d.162.1.1 -11490 1dvrA 220 1.10e+01 1zin c.37.1.1 31899 g.41.2.1 45200 1d9zA 657 1.12e+01 1d2mA c.37.1.19 32421 c.37.1.19 32422 1t5lA 658 1.14e+01 1f83A 425 1.22e+01 1f82A d.92.1.7 40306 1f82A 424 1.22e+01 1f82A d.92.1.7 40307 1hpcA 131 1.26e+01 1htp b.84.1.1 28221 2bifA 469 1.26e+01 1bif c.37.1.7 31963 c.60.1.4 34009 1nktA 922 1.28e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1xxaA 78 1.29e+01 1xxaA d.74.2.1 39700 3bifA 468 1.31e+01 1bif c.37.1.7 31962 c.60.1.4 34008 1bif 469 1.31e+01 1bif c.37.1.7 31961 c.60.1.4 34003 1s70B 299 1.32e+01 2tpt 440 1.33e+01 1brwA a.46.2.1 17759 c.27.1.1 31623 d.41.3.1 38621 1fps 348 1.35e+01 1uby a.128.1.1 19436 1cfzA 162 1.36e+01 1cfzA c.56.1.1 33754 1ubx 367 1.41e+01 1uby a.128.1.1 19439 1hqmC 1119 1.43e+01 i.8.1.1 45974 1jcmP 259 1.43e+01 c.1.2.4 71633 1mxsA 225 1.47e+01 c.1.10.1 -5485 1k6mA 432 1.50e+01 c.37.1.7 77275 c.60.1.4 77276 1h80A 464 1.57e+01 b.80.1.8 65714 1q4kA 259 1.58e+01 unknown_sccs -9459 unknown_sccs -9460 1umwA 237 1.58e+01 unknown_sccs -9455 unknown_sccs -9456 1od0A 468 1.66e+01 c.1.8.4 86818 1ldg 316 1.75e+01 1ceqA c.2.1.5 30165 d.162.1.1 42132 1ds1A 324 1.77e+01 1drtA b.82.2.2 28127 1frfS 264 1.77e+01 2frvA e.19.1.1 43312 1o5oA 221 1.85e+01 c.61.1.1 -7954 1fa0A 537 1.86e+01 1fa0B a.160.1.1 75837 d.218.1.3 75838 d.58.16.1 39335 1qm9A 198 1.98e+01 1qm9A d.58.7.1 39207 d.58.7.1 39208 1iw7C 1119 2.08e+01 e.29.1.1 71474 1cauB 184 2.09e+01 1caxB b.82.1.2 28103 1ncqC 236 2.11e+01 b.121.4.1 -2986 1dv4E 145 2.14e+01 i.1.1.3 45875 1lt8A 406 2.14e+01 c.1.26.1 78186 1eg0B 148 2.14e+01 1pkp i.1.1.1 45808 1e6vC 258 2.17e+01 1mroC d.58.31.1 39439 1bpyA 335 2.20e+01 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1pkp 150 2.21e+01 1pkp d.14.1.1 37551 d.50.1.2 38787 7timA 247 2.25e+01 1amk c.1.1.1 28457 7odcA 424 2.28e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1sb8A 352 2.30e+01 3ypiA 247 2.42e+01 1amk c.1.1.1 28463 1hruA 188 2.53e+01 1hruA d.115.1.1 40926 1cbf 285 2.63e+01 1cbf c.90.1.1 35587 1bg6 359 2.65e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1i10A 331 2.67e+01 3ldh c.2.1.5 61499 d.162.1.1 61500 1h0cA 392 2.70e+01 c.67.1.3 83424 1we3O 100 2.76e+01 2ldxA 331 2.79e+01 1i45A 248 2.79e+01 1amk c.1.1.1 61665 1neyA 247 2.80e+01 c.1.1.1 80449 1umyA 407 2.81e+01 c.1.26.1 -5656 1oaoC 729 2.83e+01 e.26.1.3 86746 1e08A 371 2.86e+01 i.4.1.1 45914 1sa0A 451 2.89e+01 c.32.1.1 -6782 d.79.2.1 -10391 1m65A 245 2.91e+01 c.6.3.1 84847 1mjgM 729 2.92e+01 e.26.1.3 79204 1rcuA 195 2.99e+01 unknown_sccs -7279 2cbf 234 3.01e+01 1cbf c.90.1.1 35588 1jftA 340 3.04e+01 a.35.1.5 66652 c.93.1.1 66653 1mkhA 107 3.04e+01 b.40.4.4 79238 1p9bA 442 3.06e+01 c.37.1.10 -7115 1rblI 109 3.16e+01 1gq6A 313 3.25e+01 c.42.1.1 70341 1j04A 392 3.26e+01 c.67.1.3 -8171 1lldA 319 3.26e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1q8gA 166 3.31e+01 1hfeL 421 3.35e+01 1fehA c.96.1.1 36018 d.58.1.5 39001 1dmtA 696 3.46e+01 1dmtA d.92.1.4 40296 2cts 437 3.65e+01 1csh a.103.1.1 18896 1cts 437 3.67e+01 1csh a.103.1.1 18897 1epwA 1290 3.68e+01 b.29.1.6 24269 b.42.4.2 25614 d.92.1.7 40305 h.4.2.1 45785 1po0A 751 3.77e+01 f.4.3.3 -12363 1vypX 364 3.80e+01 1j8mF 297 3.82e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 2mspA 126 3.83e+01 1mspA b.1.11.2 22335 1kmoA 774 3.89e+01 f.4.3.3 72753 1bdqA 99 3.91e+01 1fmb b.50.1.1 26686 1jvnA 555 3.91e+01 c.1.2.1 67355 c.23.16.1 67356 1tfpA 130 3.92e+01 1etb1 b.3.4.1 22623 1uaaA 673 3.92e+01 1pjr c.37.1.19 32401 c.37.1.19 32402 2pugA 340 3.94e+01 1qpzA a.35.1.5 17088 c.93.1.1 35683 1nt2A 210 3.95e+01 c.66.1.3 86149 1ac5 483 3.96e+01 1ac5 c.69.1.5 34653 1qqbA 340 3.98e+01 1qpzA a.35.1.5 17099 c.93.1.1 35674 1fmmS 132 3.99e+01 1bfg b.42.1.1 59883