# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1cbf 285 2.11e-01 1cbf c.90.1.1 35587 1kb0A 677 2.62e-01 a.3.1.6 68378 b.70.1.1 68379 1vhcA 224 4.50e-01 c.1.10.1 -5488 1i8dA 213 4.79e-01 b.43.4.3 61953 b.43.4.3 61954 1przA 252 7.06e-01 unknown_sccs -10158 1v9fA 325 7.53e-01 1v9kA 228 1.05e+00 1iw7C 1119 1.12e+00 e.29.1.1 71474 1oi7A 288 1.31e+00 c.2.1.8 87049 c.23.4.1 87050 1qpoA 284 1.52e+00 1qpoA c.1.17.1 29561 d.41.2.1 38597 1j96A 323 1.53e+00 c.1.7.1 71616 1s1pA 331 1.87e+00 c.1.7.1 -5240 1bkzA 135 1.97e+00 1a3k b.29.1.3 24202 1jvnA 555 2.57e+00 c.1.2.1 67355 c.23.16.1 67356 1vjrA 271 2.64e+00 unknown_sccs -6853 1ds1A 324 2.91e+00 1drtA b.82.2.2 28127 1gmuA 143 3.58e+00 b.107.1.1 65335 d.58.38.1 65336 1nktA 922 3.89e+00 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 2ebn 289 3.92e+00 2ebn c.1.8.5 28990 1lt8A 406 4.75e+00 c.1.26.1 78186 1iqvA 218 4.79e+00 1rss a.75.1.1 62661 1brmA 367 4.95e+00 1brmA c.2.1.3 30030 d.81.1.1 39945 1earA 147 5.08e+00 b.107.1.1 64875 d.58.38.1 64876 1edt 271 5.51e+00 2ebn c.1.8.5 28993 1g0oA 283 5.60e+00 1ybvA c.2.1.2 60181 1nhs 447 6.00e+00 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1mugA 168 6.02e+00 1mugA c.18.1.2 31030 1zfjA 491 6.42e+00 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1efvB 255 7.08e+00 1efvB c.26.2.3 31634 1erjA 393 7.08e+00 1erjA b.69.4.1 27660 1op0A 234 7.53e+00 1ju3A 583 7.94e+00 b.18.1.13 67300 c.69.1.21 67301 1t4bA 367 8.14e+00 1uxxX 133 8.15e+00 b.18.1.10 -3107 1gmmA 133 8.27e+00 b.18.1.10 65314 1f6yA 262 8.53e+00 1f6yA c.1.21.2 29673 1sjwA 144 8.60e+00 unknown_sccs -9296 1nhp 447 8.65e+00 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1geqA 248 8.68e+00 2tysA c.1.2.4 28589 1fjgQ 105 9.03e+00 1fjfQ b.40.4.5 25352 1eqcA 394 9.53e+00 1cz1A c.1.8.3 28811 1iwmA 186 9.62e+00 b.125.1.2 83758 1j3vA 289 9.62e+00 a.100.1.1 -1303 c.2.1.6 -5947 1el5A 389 1.02e+01 1b3mA c.3.1.2 30369 d.16.1.3 37937 1m65A 245 1.03e+01 c.6.3.1 84847 1rpxA 230 1.04e+01 1rpxA c.1.2.2 28536 7odcA 424 1.10e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1udc 338 1.10e+01 1xel c.2.1.2 29785 1gz6A 319 1.11e+01 c.2.1.2 76410 1rqpA 299 1.15e+01 unknown_sccs -4411 unknown_sccs -7908 1eulA 994 1.23e+01 1eulA 1o17A 345 1.25e+01 a.46.2.1 80765 c.27.1.1 80766 1xel 338 1.27e+01 1xel c.2.1.2 29786 1ou0A 207 1.33e+01 c.23.17.1 -6498 1jqlB 140 1.35e+01 c.37.1.20 63234 1dmhA 311 1.37e+01 1dmhA b.3.6.1 22633 1bg6 359 1.39e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1orvA 728 1.46e+01 b.70.3.1 87354 c.69.1.24 87355 1rlr 761 1.47e+01 1rlr a.98.1.1 18753 c.7.1.2 30679 1p3dA 475 1.48e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1nofA 383 1.49e+01 b.71.1.2 -4668 c.1.8.3 -5339 1gctA 245 1.49e+01 5ptp b.47.1.2 26021 1g8aA 227 1.60e+01 c.66.1.3 -8049 1cydA 244 1.61e+01 1cydA c.2.1.2 29825 1q7bA 244 1.63e+01 c.2.1.2 -5826 1o1xA 155 1.64e+01 c.121.1.1 86553 1h2wA 710 1.65e+01 b.69.7.1 76596 c.69.1.4 76597 1qfmA 710 1.65e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1dd9A 338 1.69e+01 1dd9A e.13.1.1 43254 1dboA 506 1.70e+01 1dbgA b.80.1.4 28034 1dbgA 506 1.70e+01 1dbgA b.80.1.4 28033 1f20A 435 1.70e+01 b.43.4.1 64932 c.25.1.4 64933 1tidB 119 1.72e+01 1a49A 530 1.75e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1mb4A 370 1.77e+01 c.2.1.3 78908 d.81.1.1 78909 1qwrA 319 1.83e+01 b.82.1.3 -4880 1vhyA 257 1.94e+01 b.122.1.2 -5129 c.116.1.5 -6705 1hw6A 278 2.02e+01 1frb c.1.7.1 61296 1uayA 242 2.05e+01 c.2.1.2 88390 1k8tA 510 2.06e+01 e.41.1.1 68316 1k8kA 418 2.06e+01 c.55.1.1 68305 c.55.1.1 68306 1l6oA 95 2.09e+01 b.36.1.1 84534 1bqyA 234 2.12e+01 5ptp b.47.1.2 26332 1e3dA 266 2.18e+01 2frvA e.19.1.1 59188 1kjwA 295 2.20e+01 b.34.2.1 68643 c.37.1.1 68644 1cc1S 283 2.22e+01 2frvA e.19.1.1 43313 1n55A 251 2.26e+01 c.1.1.1 80007 1o54A 277 2.27e+01 c.66.1.13 -8095 1fbnA 230 2.30e+01 1fbnA c.66.1.3 34181 1l1jA 239 2.32e+01 b.47.1.1 84516 1euaA 213 2.32e+01 1fwrA c.1.10.1 29155 1fltV 98 2.33e+01 1vpfA g.17.1.1 44751 2pii 112 2.37e+01 2pii d.58.5.1 39071 1amk 251 2.38e+01 1amk c.1.1.1 28503 1lrzA 426 2.39e+01 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1sxjE 354 2.42e+01 1h4pA 408 2.46e+01 c.1.8.3 -5314 1bl3A 160 2.48e+01 1b9dA c.55.3.2 33655 1gadO 330 2.53e+01 1dssG c.2.1.3 29950 d.81.1.1 39865 4pgaA 337 2.54e+01 4pgaA c.88.1.1 35565 1su4A 994 2.58e+01 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1ekqA 272 2.58e+01 1c3qA c.72.1.2 34941 1fw9A 164 2.62e+01 1fw9A d.190.1.1 60059 1g8sA 230 2.62e+01 c.66.1.3 -8047 1c0pA 363 2.64e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1pkp 150 2.71e+01 1pkp d.14.1.1 37551 d.50.1.2 38787 1dar 691 2.72e+01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1j0hA 588 2.74e+01 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1e2tA 284 2.75e+01 1e2tA d.3.1.5 37121 1juhA 350 2.76e+01 b.82.1.5 71884 1a7s 221 2.78e+01 1a7s b.47.1.2 26284 1lf2A 331 2.79e+01 b.50.1.2 77914 1g6oA 330 2.80e+01 1g6oA c.37.1.11 32430 1nxzA 246 2.81e+01 b.122.1.2 86391 c.116.1.5 86392 1iz6A 138 2.83e+01 b.34.5.2 76976 b.40.4.5 76977 1r53A 382 2.86e+01 unknown_sccs -11177 1p2fA 220 2.91e+01 a.4.6.1 87720 c.23.1.1 87721 1fjgB 256 2.93e+01 1fjfB c.23.15.1 31400 1rf6A 427 2.94e+01 d.68.2.2 -10314 1kit 757 3.00e+01 1kit b.29.1.8 24272 b.29.1.8 24273 b.68.1.1 27616 1f86A 115 3.01e+01 1etb1 b.3.4.1 59689 1l8dA 112 3.02e+01 h.4.12.1 73687 1php 394 3.05e+01 16pk c.86.1.1 35452 1nsj 205 3.16e+01 1nsj c.1.2.4 28560 7ahlA 293 3.18e+01 7ahlA f.6.1.1 43812 1n57A 291 3.19e+01 c.23.16.2 85328 1o0yA 260 3.31e+01 c.1.10.1 80756 1ujnA 348 3.35e+01 e.22.1.1 -11998 1o6uA 403 3.35e+01 a.5.3.1 -366 unknown_sccs -3048 c.13.1.1 -6221 1vypX 364 3.36e+01 1aszB 490 3.42e+01 1b8aA b.40.4.1 25241 d.104.1.1 40762 1e1oA 504 3.42e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1o7jA 327 3.43e+01 c.88.1.1 81140 1lssA 140 3.44e+01 c.2.1.9 74246 1qopA 268 3.50e+01 2tysA c.1.2.4 28570 1gd7A 109 3.65e+01 b.40.4.4 60441 1rz2A 254 3.70e+01 1nar 290 3.71e+01 1nar c.1.8.5 28988 1qftA 175 3.75e+01 1qftA b.60.1.1 27151 1iz5A 249 3.76e+01 d.131.1.2 83834 d.131.1.2 83835 1nriA 306 3.77e+01 c.80.1.3 86123 1lylA 504 3.89e+01 1lylA b.40.4.1 25261 d.104.1.1 40717 1o7iA 119 3.91e+01 b.40.4.3 86642 1edg 380 3.95e+01 1edg c.1.8.3 28807 1kv8A 216 3.96e+01 c.1.2.3 73054 1q6oA 216 3.96e+01 c.1.2.3 -5162