# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lrzA 426 2.54e-02 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1vhcA 224 2.58e-01 c.1.10.1 -5488 1ayfA 105 3.77e-01 1ayfA d.15.4.1 37684 1bif 469 7.87e-01 1bif c.37.1.7 31961 c.60.1.4 34003 1iwmA 186 1.13e+00 b.125.1.2 83758 1jg5A 83 1.29e+00 d.205.1.1 66666 1gmmA 133 1.57e+00 b.18.1.10 65314 1uxxX 133 1.93e+00 b.18.1.10 -3107 1d2nA 272 1.97e+00 1d2nA c.37.1.20 32428 1j6oA 268 1.98e+00 c.1.9.12 77088 2tpsA 227 2.69e+00 2tpsA c.1.3.1 28591 1m65A 245 2.99e+00 c.6.3.1 84847 1pq4A 291 3.00e+00 c.92.2.2 -8633 1eyeA 280 3.23e+00 1aj2 c.1.21.1 29672 1nsf 273 3.44e+00 1d2nA c.37.1.20 32429 1a99A 344 4.02e+00 1pot c.94.1.1 35812 1bowA 159 4.70e+00 1bowA d.60.1.1 39528 1bkzA 135 5.52e+00 1a3k b.29.1.3 24202 1q77A 138 5.54e+00 c.26.2.4 -6639 1svy 114 7.60e+00 1svy d.109.1.1 40831 1kutA 230 7.63e+00 d.143.1.1 73017 1r53A 382 8.57e+00 unknown_sccs -11177 1gd7A 109 8.64e+00 b.40.4.4 60441 1jqlB 140 8.99e+00 c.37.1.20 63234 1is1A 185 1.05e+01 d.67.3.1 83704 1pjqA 457 1.06e+01 c.2.1.11 -5904 c.90.1.1 -8611 e.37.1.1 -12004 1shdA 107 1.07e+01 1fmk d.93.1.1 40440 1fjgB 256 1.12e+01 1fjfB c.23.15.1 31400 1tk9A 188 1.12e+01 1g7oA 215 1.15e+01 1g7oA a.45.1.1 60332 c.47.1.5 60333 1oi7A 288 1.18e+01 c.2.1.8 87049 c.23.4.1 87050 7odcA 424 1.22e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1qtsA 247 1.25e+01 1qtsA b.1.10.1 22313 d.105.1.1 40789 1kevA 351 1.25e+01 1pedA b.35.1.2 24749 c.2.1.1 29765 1dnlA 199 1.26e+01 1ci0A b.45.1.1 25753 1regX 122 1.31e+01 1regX d.58.27.1 39406 1e3dA 266 1.34e+01 2frvA e.19.1.1 59188 1nriA 306 1.38e+01 c.80.1.3 86123 1kyfA 247 1.44e+01 b.1.10.1 73220 d.105.1.1 73221 1es9A 232 1.56e+01 1wab c.23.10.3 31340 1qxoA 388 1.62e+01 unknown_sccs -11161 1jr2A 286 1.76e+01 c.113.1.1 67111 1shbA 104 1.77e+01 1fmk d.93.1.1 40425 2viuA 328 1.81e+01 1hgeA b.19.1.2 23797 1q15A 503 1.82e+01 c.26.2.1 -6625 d.153.1.1 -11400 1nktA 922 1.84e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1khbA 625 1.88e+01 c.91.1.1 68606 c.109.1.1 68607 1o5oA 221 1.97e+01 c.61.1.1 -7954 1k0mA 241 1.97e+01 a.45.1.1 67949 c.47.1.5 67950 1q7bA 244 2.01e+01 c.2.1.2 -5826 1l6oA 95 2.04e+01 b.36.1.1 84534 1i6lA 328 2.07e+01 c.26.1.1 66041 1rl2A 137 2.12e+01 1rl2A b.34.5.3 24610 b.40.4.5 25342 1khiA 176 2.14e+01 b.34.5.2 77408 b.40.4.5 77409 1jqbA 351 2.30e+01 b.35.1.2 77151 c.2.1.1 77152 1jq5A 370 2.30e+01 e.22.1.2 67084 1exrA 148 2.32e+01 1cll a.39.1.5 17299 1wab 232 2.33e+01 1wab c.23.10.3 31341 1ohvA 472 2.34e+01 c.67.1.4 -8181 1o4rA 108 2.36e+01 d.93.1.1 -10624 1lldA 319 2.41e+01 3ldh c.2.1.5 30177 d.162.1.1 42144 1mw7A 240 2.43e+01 e.39.1.1 79557 1p99A 295 2.45e+01 c.94.1.1 -8697 1n9pA 207 2.46e+01 b.1.18.16 80343 1rkd 309 2.50e+01 1rkd c.72.1.1 34928 1earA 147 2.60e+01 b.107.1.1 64875 d.58.38.1 64876 1hdr 244 2.60e+01 1dhr c.2.1.2 29837 1pixA 587 2.62e+01 c.14.1.4 -6282 1ad1A 266 2.63e+01 1aj2 c.1.21.1 29668 1b5fB 87 2.68e+01 1b5fB 1sbxA 106 2.71e+01 1knwA 425 2.73e+01 b.49.2.3 -4274 c.1.6.1 -5229 1n0lA 224 2.78e+01 b.1.11.1 79744 b.7.2.1 79745 1g4yR 148 2.80e+01 1cll a.39.1.5 60252 1qpxA 218 2.87e+01 1qpxA b.1.11.1 22318 b.7.2.1 23200 1ha3A 405 2.92e+01 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1f39A 101 2.92e+01 1umuA b.87.1.1 28386 1apyB 141 2.97e+01 1apyB 1e0wA 313 3.00e+01 1taxA c.1.8.3 59150 1dxy 333 3.00e+01 1dxy c.2.1.4 30094 c.23.12.1 31354 1l1zA 274 3.01e+01 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1cs6A 382 3.06e+01 1cs6A b.1.1.4 21760 b.1.1.4 21761 b.1.1.4 21762 b.1.1.4 21763 1xvaA 292 3.12e+01 1xvaA c.66.1.5 34183 1adjA 421 3.12e+01 1adjA c.51.1.1 33188 d.104.1.1 40737 1e6cA 173 3.16e+01 1shkA c.37.1.2 59296 1ggzA 148 3.21e+01 a.39.1.5 70176 1f6dA 376 3.36e+01 1f6dA c.87.1.3 35467 4pgaA 337 3.36e+01 4pgaA c.88.1.1 35565 1h4vB 421 3.37e+01 1adjA c.51.1.1 60624 d.104.1.1 60625 1geqA 248 3.43e+01 2tysA c.1.2.4 28589 1exmA 405 3.48e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1g60A 260 3.49e+01 c.66.1.11 70151 1f3uA 118 3.58e+01 1f3uA b.65.1.1 27521 1nq6A 302 3.68e+01 c.1.8.3 -5332 2ak3A 226 3.75e+01 1zin c.37.1.1 31892 g.41.2.1 45193 1dz3A 130 3.77e+01 1dz3A c.23.1.1 31105 1lf7A 182 3.77e+01 b.60.1.1 73878 1k3bA 119 3.78e+01 b.61.5.1 72016 1top 162 3.80e+01 1ncx a.39.1.5 17223 1nstA 325 3.83e+01 1nstA c.37.1.5 31951 1od8A 313 3.85e+01 c.1.8.3 86838 1p57A 114 3.86e+01 unknown_sccs -11657 1i7wA 538 3.93e+01 3bct a.118.1.1 61909