PFRMAT RR
TARGET T0261
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MEGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPFRVAHKRVRDLPE
FLRPGDVLVFNESKVIPARLLARKPTGGKVEILLVRERSPGLWEALLGPA
RKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQGDLVAHLEE
VGEVPLPPYIKAKIPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREM
GVELRFLTLHVGPGTFRPVKGDPEKHEMHAEPYAIPEEVAEAVNRAKAEG
RRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTN
FHLPRSTLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL
72 284 0 8 0.53125
25 99 0 8 0.5066
171 202 0 8 0.46155
42 327 0 8 0.3434
56 321 0 8 0.31195
24 171 0 8 0.3026
25 87 0 8 0.2907
217 338 0 8 0.28815
211 311 0 8 0.2771
303 336 0 8 0.26605
171 285 0 8 0.2465
15 329 0 8 0.2448
25 100 0 8 0.24225
99 136 0 8 0.2346
42 333 0 8 0.2346
184 337 0 8 0.23205
181 337 0 8 0.23205
103 204 0 8 0.23205
296 307 0 8 0.2261
72 109 0 8 0.2261
107 204 0 8 0.22185
52 314 0 8 0.22015
21 336 0 8 0.22015
308 337 0 8 0.21675
171 281 0 8 0.21675
71 204 0 8 0.20655
80 138 0 8 0.20145
8 305 0 8 0.1972
188 211 0 8 0.1955
188 311 0 8 0.1921
239 321 0 8 0.1904
25 190 0 8 0.1887
40 112 0 8 0.1802
END