CreatePredAlphaCost pred_alpha2k alpha11 T0257.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0257.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 10 near_backbone 5 way_back 5 dry5 15 dry6.5 25 dry8 20 dry12 10 \
	phobic_fit 4 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 40  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

# from T0257.t04.dssp-ehl2.constraints
HelixConstraint 	P67	S74	6.469

StrandConstraint	M5	I9	6.203
StrandConstraint	I25	S31	6.596
StrandConstraint	V51	V53	6.743
StrandConstraint	L56	Y61	6.497
StrandConstraint	A82	K88	8.21
StrandConstraint	V95	L102	7.435
StrandConstraint	V105	S111	7.016
StrandConstraint	T122	P138	6.423
StrandConstraint	K151	Y152	6.093


# file generated by validate2rr
# based on 280 inputs
# using the /projects/compbio/experiments/protein-predict/casp6/networks/NN280-240n300.net.28 network
# limited to score of .30 or greater.
# The score is an approximation of the probability
Constraint V110.CB Y136.CB -10. 7.0 14.0 0.655
Constraint L98.CB Y136.CB -10. 7.0 14.0 0.582 
Constraint D18.CB N68.CB -10. 7.0 14.0 0.573 
Constraint V95.CB G147.CA -10. 7.0 14.0 0.514
Constraint N68.CB R87.CB -10. 7.0 14.0 0.514 
Constraint D18.CB R87.CB -10. 7.0 14.0 0.502 
Constraint E24.CB R87.CB -10. 7.0 14.0 0.495 
Constraint N68.CB A141.CB -10. 7.0 14.0 0.486 
Constraint N68.CB Y136.CB -10. 7.0 14.0 0.486 
Constraint K77.CB V95.CB -10. 7.0 14.0 0.472 
Constraint W32.CB R87.CB -10. 7.0 14.0 0.457 
Constraint V53.CB F129.CB -10. 7.0 14.0 0.445 
Constraint K77.CB A141.CB -10. 7.0 14.0 0.433 
Constraint C73.CB V105.CB -10. 7.0 14.0 0.43 
Constraint S16.CB G76.CA -10. 7.0 14.0 0.427 
Constraint W32.CB K88.CB -10. 7.0 14.0 0.412 
Constraint D55.CB G147.CA -10. 7.0 14.0 0.401 
Constraint E15.CB R87.CB -10. 7.0 14.0 0.401 
Constraint G91.CA Q139.CB -10. 7.0 14.0 0.392 bonus
Constraint S16.CB D26.CB -10. 7.0 14.0 0.392 bonus
Constraint V95.CB A141.CB -10. 7.0 14.0 0.381 bonus
Constraint C73.CB Y136.CB -10. 7.0 14.0 0.378 bonus
Constraint E15.CB G147.CA -10. 7.0 14.0 0.378 bonus
Constraint Q36.CB C73.CB -10. 7.0 14.0 0.372 bonus
Constraint V3.CB N68.CB -10. 7.0 14.0 0.372 bonus
Constraint E15.CB D55.CB -10. 7.0 14.0 0.367 bonus
Constraint P67.CB K88.CB -10. 7.0 14.0 0.358 bonus
Constraint V105.CB Y136.CB -10. 7.0 14.0 0.356 bonus
Constraint K77.CB G147.CA -10. 7.0 14.0 0.339 bonus
Constraint G10.CA R87.CB -10. 7.0 14.0 0.337 bonus
Constraint V53.CB R87.CB -10. 7.0 14.0 0.334 bonus
Constraint S115.CB G147.CA -10. 7.0 14.0 0.329 bonus
Constraint V95.CB V105.CB -10. 7.0 14.0 0.321 bonus

Constraint Y79.CB Y136.CB -10. 7.0 14.0 0.31 bonus
Constraint S16.CB V51.CB -10. 7.0 14.0 0.31 bonus
Constraint V12.CB V51.CB -10. 7.0 14.0 0.305 bonus
Constraint N68.CB V110.CB -10. 7.0 14.0 0.303 bonus


# from try3-opt2 sheets 
SheetConstraint F6 V12		N155 P149	hbond I7	7
SheetConstraint D11 K13		H21 K19		hbond V12	7
SheetConstraint A22 D26		Q131 L127	hbond E24	7
#SheetConstraint W32 G38		L102 E96	hbond G33
#SheetConstraint M34 G38		V160 I156	hbond Q36
SheetConstraint G38 H41		N155 Y152	hbond M40	7
SheetConstraint G47 V51		Q133 F129	hbond A48	7
SheetConstraint G47 N52		I62 S57		hbond G49	7
SheetConstraint T66 L69		I86 K83		hbond N68	7
SheetConstraint E96 L102	S111 V105	hbond L98	7

# selected sheet constraints to flip the strands over
SheetConstraint W32 Q36		L102 L98	hbond M34	15
SheetConstraint G33 S37		V160 I156	hbond S35	15