CreatePredAlphaCost pred_alpha2k alpha11 T0257.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0257.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 5 dry12 2 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

# from T0257.t04.dssp-ehl2.constraints
HelixConstraint 	P67	S74	6.469

StrandConstraint	M5	I9	6.203
StrandConstraint	I25	S31	6.596
StrandConstraint	V51	V53	6.743
StrandConstraint	L56	Y61	6.497
StrandConstraint	A82	K88	8.21
StrandConstraint	V95	L102	7.435
StrandConstraint	V105	S111	7.016
StrandConstraint	T122	P138	6.423
StrandConstraint	K151	Y152	6.093


# file generated by validate2rr
# based on 280 inputs
# using the /projects/compbio/experiments/protein-predict/casp6/networks/NN280-240n300.net.28 network
# limited to score of .30 or greater.
# The score is an approximation of the probability
Constraint V110.CB Y136.CB -10. 7.0 14.0 0.655
Constraint L98.CB Y136.CB -10. 7.0 14.0 0.582 
Constraint D18.CB N68.CB -10. 7.0 14.0 0.573 
Constraint V95.CB G147.CA -10. 7.0 14.0 0.514
Constraint N68.CB R87.CB -10. 7.0 14.0 0.514 
Constraint D18.CB R87.CB -10. 7.0 14.0 0.502 
Constraint E24.CB R87.CB -10. 7.0 14.0 0.495 
Constraint N68.CB A141.CB -10. 7.0 14.0 0.486 
Constraint N68.CB Y136.CB -10. 7.0 14.0 0.486 
Constraint K77.CB V95.CB -10. 7.0 14.0 0.472 
Constraint W32.CB R87.CB -10. 7.0 14.0 0.457 
Constraint V53.CB F129.CB -10. 7.0 14.0 0.445 
Constraint K77.CB A141.CB -10. 7.0 14.0 0.433 
Constraint C73.CB V105.CB -10. 7.0 14.0 0.43 
Constraint S16.CB G76.CA -10. 7.0 14.0 0.427 
Constraint W32.CB K88.CB -10. 7.0 14.0 0.412 
Constraint D55.CB G147.CA -10. 7.0 14.0 0.401 
Constraint E15.CB R87.CB -10. 7.0 14.0 0.401 
Constraint G91.CA Q139.CB -10. 7.0 14.0 0.392 bonus
Constraint S16.CB D26.CB -10. 7.0 14.0 0.392 bonus
Constraint V95.CB A141.CB -10. 7.0 14.0 0.381 bonus
Constraint C73.CB Y136.CB -10. 7.0 14.0 0.378 bonus
Constraint E15.CB G147.CA -10. 7.0 14.0 0.378 bonus
Constraint Q36.CB C73.CB -10. 7.0 14.0 0.372 bonus
Constraint V3.CB N68.CB -10. 7.0 14.0 0.372 bonus
Constraint E15.CB D55.CB -10. 7.0 14.0 0.367 bonus
Constraint P67.CB K88.CB -10. 7.0 14.0 0.358 bonus
Constraint V105.CB Y136.CB -10. 7.0 14.0 0.356 bonus
Constraint K77.CB G147.CA -10. 7.0 14.0 0.339 bonus
Constraint G10.CA R87.CB -10. 7.0 14.0 0.337 bonus
Constraint V53.CB R87.CB -10. 7.0 14.0 0.334 bonus
Constraint S115.CB G147.CA -10. 7.0 14.0 0.329 bonus
Constraint V95.CB V105.CB -10. 7.0 14.0 0.321 bonus
Constraint Y79.CB Y136.CB -10. 7.0 14.0 0.31 bonus
Constraint S16.CB V51.CB -10. 7.0 14.0 0.31 bonus
Constraint V12.CB V51.CB -10. 7.0 14.0 0.305 bonus
Constraint N68.CB V110.CB -10. 7.0 14.0 0.303 bonus


# The following sheet constraints are (probably) inconsistent

# from align1.sheets
SheetConstraint Y79 K83  	S111 V107  	hbond A82
SheetConstraint K83 A89  	L98 E92  	hbond L84
SheetConstraint V107 G113  	A130 N124  	hbond V107

# from align2.sheets
SheetConstraint D55 T59  	T85 Q81  	hbond S57
SheetConstraint S108 S115  	F129 T122  	hbond S108
SheetConstraint E123 F129  	P138 V132  	hbond N124
SheetConstraint A130 D135  	Y152 G147  	hbond V132


#from align3.sheets
SheetConstraint H41 G44  	I62 T59  	hbond G43
SheetConstraint G45 A48  	T59 L56  	hbond G46
SheetConstraint Q54 Y61  	C73 T66  	hbond D55
SheetConstraint N68 S75  	N128 L121  	hbond L69
SheetConstraint T112 S115  	T126 E123  	hbond T112


#from try1-opt2.sheets
SheetConstraint H78 R87  	I100 G91  	hbond Y79
SheetConstraint V105 V107  	R120 E118  	hbond L106
SheetConstraint G117 R120  	P138 D135  	hbond E118
SheetConstraint A130 D135  	V150 K145  	hbond V132