# List of top-scoring protein chains for T0257.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jqbA 351 3.32e+00 b.35.1.2 77151 c.2.1.1 77152 1kevA 351 3.55e+00 1pedA b.35.1.2 24749 c.2.1.1 29765 1o9uA 350 3.79e+00 d.144.1.7 -11301 1h8fB 350 4.38e+00 d.144.1.7 65734 1h8fA 352 4.41e+00 d.144.1.7 65733 1uv5A 350 4.42e+00 d.144.1.7 -11316 1gfc 59 4.60e+00 1griA b.34.2.1 24537 1gcqA 61 4.63e+00 1ckaA b.34.2.1 60434 1dn1A 594 5.95e+00 1dn1A e.25.1.1 43357 1czfA 362 6.63e+00 1czfA b.80.1.3 28031 1ny9A 143 6.92e+00 a.181.1.1 86401 1qw9A 502 8.19e+00 b.71.1.2 -4677 c.1.8.3 -5348 1pz3A 502 8.22e+00 b.71.1.2 -4673 c.1.8.3 -5344 1griA 217 1.07e+01 1griA b.34.2.1 24531 b.34.2.1 24532 d.93.1.1 40473 1hgwA 365 1.22e+01 c.6.1.1 65831 1hgyA 365 1.24e+01 c.6.1.1 65833 1a85A 158 1.25e+01 1hfc d.92.1.11 40355 1qk2A 363 1.25e+01 1bvwA c.6.1.1 30659 3cbh 365 1.25e+01 1bvwA c.6.1.1 30665 1qjwA 365 1.26e+01 1bvwA c.6.1.1 30657 1qcrJ 59 1.27e+01 1be3J f.23.14.1 43679 1oxjA 173 1.27e+01 a.60.1.2 87517 a.118.1.13 87518 1i76A 163 1.28e+01 1hfc d.92.1.11 61877 1kbcA 164 1.29e+01 1hfc d.92.1.11 40350 1bzsA 165 1.30e+01 1hfc d.92.1.11 40348 1mnc 163 1.39e+01 1hfc d.92.1.11 40353 1ppjJ 62 1.42e+01 1bccJ 62 1.63e+01 1be3J f.23.14.1 43703 1visA 324 1.66e+01 d.14.1.5 -9086 d.58.26.3 -10131 1s9aA 257 1.70e+01 1k87A 669 1.72e+01 a.176.1.1 77286 c.1.23.2 77287 1mq7A 154 1.80e+01 b.85.4.1 79404 1c8pA 102 1.83e+01 1c8pA b.1.2.1 22040 1qxtA 230 1.83e+01 d.22.1.1 -9433 1egjA 101 1.87e+01 1c8pA b.1.2.1 22039 1fbr 93 1.89e+01 1fbr g.27.1.1 44948 g.27.1.1 44949 1qy3A 229 1.90e+01 d.22.1.1 -9434 1qs8A 329 1.90e+01 1smrA b.50.1.2 26887 1nkwI 134 1.94e+01 i.1.1.2 80594 1pnuI 132 1.95e+01 i.1.1.1 88206 1sixA 174 1.96e+01 b.85.4.1 -5030 1miqA 375 2.07e+01 b.50.1.2 79151 1ykfA 352 2.12e+01 1pedA b.35.1.2 24757 c.2.1.1 29773 1ojxA 263 2.17e+01 c.1.10.1 -5445 1gngA 378 2.18e+01 d.144.1.7 76239 1figH 216 2.25e+01 1igtB b.1.1.1 19923 b.1.1.2 21017 1b0xA 94 2.26e+01 1b4fA a.60.1.2 17933 1j1bA 420 2.27e+01 d.144.1.7 -11312 1pyxA 422 2.27e+01 d.144.1.7 -11310 1q41A 424 2.28e+01 d.144.1.7 -11308 1sjnA 170 2.49e+01 b.85.4.1 -5031 1mqmB 221 2.56e+01 h.3.1.1 -12951 1b78A 193 2.90e+01 1b78A c.51.4.1 33221 1dun 134 2.95e+01 1dun b.85.4.1 28371 1fthA 122 3.05e+01 d.150.1.2 60028 1kkhA 317 3.06e+01 d.14.1.5 72645 d.58.26.3 72646 1gqpA 221 3.10e+01 b.18.1.9 70372 1gy7A 125 3.39e+01 d.17.4.2 70738 1qyoA 239 3.49e+01 d.22.1.1 -9435 1gbg 214 3.55e+01 1axkA b.29.1.2 24171 1g0uB 245 3.68e+01 d.153.1.4 41947 1rypC 244 3.68e+01 1rypC d.153.1.4 41934 1mr3F 181 3.71e+01 c.37.1.8 79422 1axiB 236 3.72e+01 1axiB b.1.2.1 21997 b.1.2.1 21998 1bywA 110 3.73e+01 1bywA d.110.3.6 40912 1ic7H 114 3.89e+01 1f3rB b.1.1.1 62258 1t3nA 388 3.90e+01 1j1iA 296 3.94e+01 c.69.1.10 83977