# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1j2gA	319	5.97e-01			
1gbg	214	1.26e+00	1axkA	b.29.1.2	24171
2ayh	214	2.47e+00	1axkA	b.29.1.2	24172
1b12A	248	2.54e+00	1b12A	b.87.1.2	28388
1ystH	260	2.68e+00	6prcH	b.41.1.1	25482
				f.23.10.1	43511
1kn9A	249	2.77e+00		b.87.1.2	68699
1f8eA	388	3.68e+00	2qwc	b.68.1.1	59694
3nn9	388	3.77e+00	2qwc	b.68.1.1	27566
1j5wA	298	3.83e+00		d.104.1.1	71589
1cpn	208	4.00e+00	1axkA	b.29.1.2	24175
5nn9	388	4.08e+00	2qwc	b.68.1.1	27563
1bywA	110	4.27e+00	1bywA	d.110.3.6	40912
1jssA	224	5.11e+00		d.129.3.2	71844
1ln1A	214	6.75e+00		d.129.3.2	74038
1tc1A	220	7.01e+00	1tc1A	c.61.1.1	34083
1vzoA	355	8.11e+00			
1k4jA	230	9.42e+00		d.108.1.3	72057
1jd0A	263	9.49e+00	2cba	b.74.1.1	62888
1d3bA	75	9.94e+00	1d3bA	b.38.1.1	24798
2qwc	388	1.01e+01	2qwc	b.68.1.1	27547
1i3uA	127	1.12e+01	1gc1H	b.1.1.1	61636
1miuA	738	1.21e+01		a.170.1.1	79153
				a.171.1.1	79154
				b.40.4.3	79155
				b.40.4.3	79156
				b.40.4.3	79157
1ngvA	534	1.31e+01		c.111.1.2	85698
1v6fA	151	1.31e+01			
1fjrA	195	1.38e+01	1fjrA	b.102.1.1	59855
1smvA	260	1.39e+01	1smvA	b.121.4.7	23288
1sixA	174	1.46e+01		b.85.4.1	-5030
1j1tA	233	1.46e+01		unknown_sccs	-3462
1ko3A	230	1.52e+01		d.157.1.1	-11454
1ge8A	249	1.77e+01	1plq	d.131.1.2	41398
				d.131.1.2	41399
1ia8A	289	1.84e+01	1ia8A	d.144.1.7	62112
1kcxA	518	1.98e+01		b.92.1.3	-5074
				c.1.9.6	-5426
1thm	279	2.06e+01	1gci	c.41.1.1	32544
1roaA	122	2.06e+01			
1o97C	264	2.16e+01		c.26.2.3	81232
1iyjB	817	2.44e+01		a.170.1.1	76948
				a.171.1.1	76949
				b.40.4.3	76950
				b.40.4.3	76951
				b.40.4.3	76952
1e79G	272	2.45e+01	1e79G	c.49.2.1	33158
1r4wA	226	2.50e+01		unknown_sccs	-7447
1phm	310	2.66e+01	1phm	b.121.1.2	59015
				b.121.1.2	59016
1nr0A	611	2.75e+01		b.69.4.1	86078
				b.69.4.1	86079
1lvmA	229	2.79e+01		b.47.1.3	78243
1i50C	318	2.81e+01		d.74.3.1	61756
				d.181.1.1	61757
1fu1B	203	2.86e+01	1fu1B	b.59.1.1	27077
				h.1.11.1	45631
1nscA	390	2.91e+01	2qwc	b.68.1.1	27591
1mq7A	154	3.05e+01		b.85.4.1	79404
1oxwA	373	3.08e+01		c.19.1.3	87539
1iz5A	249	3.20e+01		d.131.1.2	83834
				d.131.1.2	83835
1hfoA	113	3.55e+01		d.80.1.3	61006
1k5wA	152	3.58e+01		b.7.1.2	68212
1ckmA	330	3.80e+01	1ckmA	b.40.4.6	25358
				d.142.2.3	41585
1g6q2	328	3.88e+01	1g6q2		
1pz4A	116	3.98e+01		d.106.1.1	-10780