# List of top-scoring protein chains for t2k-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ep0A 185 3.77e-01 1dzrA b.82.1.1 28080 1bywA 110 4.50e-01 1bywA d.110.3.6 40912 1ic7H 114 2.10e+00 1f3rB b.1.1.1 62258 1czfA 362 2.26e+00 1czfA b.80.1.3 28031 1i3uA 127 2.67e+00 1gc1H b.1.1.1 61636 3cbh 365 2.75e+00 1bvwA c.6.1.1 30665 1gy7A 125 2.77e+00 d.17.4.2 70738 1qcrJ 59 2.79e+00 1be3J f.23.14.1 43679 1d3bA 75 2.90e+00 1d3bA b.38.1.1 24798 1lnrI 134 4.46e+00 1eny 268 5.17e+00 1eny c.2.1.2 29910 1fthA 122 5.22e+00 d.150.1.2 60028 1qs8A 329 5.73e+00 1smrA b.50.1.2 26887 1miqA 375 5.77e+00 b.50.1.2 79151 1f7dA 136 5.93e+00 1dun b.85.4.1 28353 1irxA 523 6.15e+00 a.97.1.2 71378 c.26.1.1 71379 1h6uA 308 7.30e+00 b.1.18.15 65688 c.10.2.1 65689 1gbg 214 7.85e+00 1axkA b.29.1.2 24171 1aw0 72 9.22e+00 1aw0 d.58.17.1 39342 1fpoA 171 9.72e+00 1fpoA a.2.3.1 15693 a.23.1.1 16487 1ar0A 127 1.06e+01 1ounA d.17.4.2 38092 1ounA 127 1.06e+01 1ounA d.17.4.2 38090 1h2cA 140 1.07e+01 b.31.1.1 83462 1uacH 114 1.12e+01 b.1.1.1 -2285 1gy6A 127 1.13e+01 d.17.4.2 70736 1ogaD 215 1.15e+01 b.1.1.1 86990 b.1.1.2 86991 1mq7A 154 1.20e+01 b.85.4.1 79404 1xbl 107 1.20e+01 1bqz a.2.3.1 15697 1dun 134 1.33e+01 1dun b.85.4.1 28371 1n0xH 230 1.33e+01 b.1.1.1 -2201 b.1.1.2 -2473 1ehaA 558 1.35e+01 1ehaA b.1.18.2 21859 b.71.1.1 27786 c.1.8.1 28773 1c8pA 102 1.44e+01 1c8pA b.1.2.1 22040 1ah9 71 1.48e+01 1ah9 b.40.4.5 25330 1oxjA 173 1.53e+01 a.60.1.2 87517 a.118.1.13 87518 1i8kB 124 1.59e+01 b.1.1.1 71131 1zid 268 1.65e+01 1eny c.2.1.2 29911 1hxmD 242 1.72e+01 b.1.1.1 61373 b.1.1.2 61374 1m7vA 363 1.76e+01 d.174.1.1 78748 1gcqA 61 1.79e+01 1ckaA b.34.2.1 60434 1nziA 159 1.89e+01 b.23.1.1 86449 g.3.11.1 86450 1bzsA 165 1.96e+01 1hfc d.92.1.11 40348 1gh7A 419 1.99e+01 b.1.2.1 65194 b.1.2.1 65195 b.1.2.1 65196 b.1.2.1 65197 1jb2A 127 2.00e+01 d.17.4.2 71624 1a6wH 120 2.05e+01 1mfa b.1.1.1 20253 1oaqH 121 2.14e+01 b.1.1.1 -2287 1i76A 163 2.25e+01 1hfc d.92.1.11 61877 1n9lA 109 2.30e+01 d.110.3.6 85468 1g0uI 205 2.31e+01 d.153.1.4 41891 1hxmA 229 2.31e+01 1hxmA b.1.1.1 61367 b.1.1.2 61368 1gfc 59 2.38e+01 1griA b.34.2.1 24537 1j1xH 114 2.41e+01 b.1.1.1 77063 1rypJ 204 2.43e+01 d.153.1.4 41878 1jw3A 140 2.56e+01 d.208.1.1 67373 1dzrA 183 2.60e+01 1dzrA b.82.1.1 28076 1eh9A 558 2.62e+01 1ehaA b.1.18.2 21858 b.71.1.1 27785 c.1.8.1 28772 1cpn 208 2.66e+01 1axkA b.29.1.2 24175 1oksA 56 2.66e+01 unknown_sccs -426 1g6oA 330 2.76e+01 1g6oA c.37.1.11 32430 2mjpA 193 2.77e+01 1b78A c.51.4.1 33223 1jmcA 246 2.80e+01 1jmcA b.40.4.3 25300 b.40.4.3 25301 1pgvA 197 2.81e+01 c.10.1.1 88073 1ystH 260 2.82e+01 6prcH b.41.1.1 25482 f.23.10.1 43511 1oyjA 231 3.10e+01 a.45.1.1 87597 c.47.1.5 87598 1vavA 222 3.15e+01 1vddA 228 3.24e+01 1dqtA 117 3.36e+01 1ah1 b.1.1.1 20653 1mqkH 127 3.41e+01 b.1.1.1 85053 1k4mA 213 3.45e+01 c.26.1.3 77258 1ol0A 121 3.58e+01 b.1.1.1 -2311 1oz9A 150 3.64e+01 unknown_sccs -10588 2ayh 214 3.66e+01 1axkA b.29.1.2 24172 1qmrA 159 3.71e+01 1bv1 d.129.3.1 41314 1fjrA 195 3.75e+01 1fjrA b.102.1.1 59855 1b78A 193 3.89e+01 1b78A c.51.4.1 33221