# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1j2gA	319	8.96e-01			
1bywA	110	2.73e+00	1bywA	d.110.3.6	40912
1kn9A	249	3.82e+00		b.87.1.2	68699
1gbg	214	5.19e+00	1axkA	b.29.1.2	24171
1cpn	208	5.82e+00	1axkA	b.29.1.2	24175
1ngvA	534	6.00e+00		c.111.1.2	85698
1vzoA	355	6.45e+00			
2ayh	214	7.18e+00	1axkA	b.29.1.2	24172
1lnrI	134	7.72e+00			
1qftA	175	8.43e+00	1qftA	b.60.1.1	27151
1tc1A	220	9.00e+00	1tc1A	c.61.1.1	34083
1roaA	122	9.09e+00			
1kcxA	518	1.06e+01		b.92.1.3	-5074
				c.1.9.6	-5426
1b12A	248	1.12e+01	1b12A	b.87.1.2	28388
1uhvA	500	1.14e+01		b.71.1.2	-4683
				c.1.8.3	-5354
1sixA	174	1.20e+01		b.85.4.1	-5030
1mq7A	154	1.28e+01		b.85.4.1	79404
1f8eA	388	1.33e+01	2qwc	b.68.1.1	59694
1j5wA	298	1.34e+01		d.104.1.1	71589
1j1tA	233	1.34e+01		unknown_sccs	-3462
2qwc	388	1.38e+01	2qwc	b.68.1.1	27547
1phm	310	1.40e+01	1phm	b.121.1.2	59015
				b.121.1.2	59016
3nn9	388	1.40e+01	2qwc	b.68.1.1	27566
5nn9	388	1.44e+01	2qwc	b.68.1.1	27563
1qjwA	365	1.55e+01	1bvwA	c.6.1.1	30657
1qs8A	329	1.55e+01	1smrA	b.50.1.2	26887
1cb2A	365	1.55e+01	1bvwA	c.6.1.1	30661
1r2zA	274	1.58e+01		a.156.1.2	-370
				b.113.1.1	-5094
				g.39.1.8	-12748
1l1zA	274	1.59e+01		a.156.1.2	75911
				b.113.1.1	75912
				g.39.1.8	75913
1miqA	375	1.65e+01		b.50.1.2	79151
1miuA	738	1.78e+01		a.170.1.1	79153
				a.171.1.1	79154
				b.40.4.3	79155
				b.40.4.3	79156
				b.40.4.3	79157
1s7jA	262	1.79e+01		d.21.1.2	-9424
1sdwA	314	1.79e+01		b.121.1.2	-3024
				b.121.1.2	-3025
1a2zA	220	2.01e+01	1a2zA	c.56.4.1	33794
1smvA	260	2.36e+01	1smvA	b.121.4.7	23288
1oroA	213	2.39e+01	1opr	c.61.1.1	34093
1jd0A	263	2.88e+01	2cba	b.74.1.1	62888
1v6fA	151	2.97e+01			
1ystH	260	3.02e+01	6prcH	b.41.1.1	25482
				f.23.10.1	43511
1rovA	857	3.22e+01		a.119.1.1	-1656
				b.12.1.1	-3034
1d3bA	75	3.25e+01	1d3bA	b.38.1.1	24798
1g7eA	122	3.37e+01	1g7eA	c.47.1.7	33055
3cbh	365	3.46e+01	1bvwA	c.6.1.1	30665
1ia8A	289	3.56e+01	1ia8A	d.144.1.7	62112
1cknA	330	3.76e+01	1ckmA	b.40.4.6	25360
				d.142.2.3	41587
1ckmA	330	3.78e+01	1ckmA	b.40.4.6	25358
				d.142.2.3	41585
1ge8A	249	3.89e+01	1plq	d.131.1.2	41398
				d.131.1.2	41399
1qqgA	264	3.95e+01	1qqgA	b.55.1.2	26987
				b.55.1.2	26988