# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j2gA 319 2.05e-01 1gbg 214 1.00e+00 1axkA b.29.1.2 24171 1bywA 110 1.42e+00 1bywA d.110.3.6 40912 1cpn 208 1.78e+00 1axkA b.29.1.2 24175 2ayh 214 2.33e+00 1axkA b.29.1.2 24172 1kn9A 249 4.25e+00 b.87.1.2 68699 1vzoA 355 5.38e+00 1mq7A 154 5.61e+00 b.85.4.1 79404 5nn9 388 5.73e+00 2qwc b.68.1.1 27563 1sixA 174 5.93e+00 b.85.4.1 -5030 1qs8A 329 6.50e+00 1smrA b.50.1.2 26887 3nn9 388 6.58e+00 2qwc b.68.1.1 27566 2qwc 388 6.85e+00 2qwc b.68.1.1 27547 1kcxA 518 7.10e+00 b.92.1.3 -5074 c.1.9.6 -5426 1miqA 375 7.25e+00 b.50.1.2 79151 1lnrI 134 7.34e+00 1ngvA 534 7.44e+00 c.111.1.2 85698 1d3bA 75 7.82e+00 1d3bA b.38.1.1 24798 1irsA 112 8.90e+00 1qqgA b.55.1.2 26991 1f8eA 388 9.08e+00 2qwc b.68.1.1 59694 1b12A 248 9.24e+00 1b12A b.87.1.2 28388 1v6fA 151 9.58e+00 1tc1A 220 1.14e+01 1tc1A c.61.1.1 34083 1phm 310 1.15e+01 1phm b.121.1.2 59015 b.121.1.2 59016 1k5wA 152 1.19e+01 b.7.1.2 68212 1ei5A 520 1.27e+01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1j1tA 233 1.32e+01 unknown_sccs -3462 1ge8A 249 1.41e+01 1plq d.131.1.2 41398 d.131.1.2 41399 1r2zA 274 1.42e+01 a.156.1.2 -370 b.113.1.1 -5094 g.39.1.8 -12748 1l1zA 274 1.42e+01 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1iz5A 249 1.52e+01 d.131.1.2 83834 d.131.1.2 83835 1miuA 738 1.52e+01 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1jssA 224 1.65e+01 d.129.3.2 71844 1uhvA 500 1.68e+01 b.71.1.2 -4683 c.1.8.3 -5354 1roaA 122 1.86e+01 1qqgA 264 1.97e+01 1qqgA b.55.1.2 26987 b.55.1.2 26988 1smvA 260 2.06e+01 1smvA b.121.4.7 23288 1axkA 394 2.28e+01 1axkA b.29.1.2 24181 b.29.1.11 24315 1tuhA 156 2.29e+01 1qftA 175 2.34e+01 1qftA b.60.1.1 27151 1i50C 318 2.54e+01 d.74.3.1 61756 d.181.1.1 61757 1plr 258 2.65e+01 1plq d.131.1.2 41390 d.131.1.2 41391 1sdwA 314 2.84e+01 b.121.1.2 -3024 b.121.1.2 -3025 8prn 289 2.96e+01 3prn f.4.3.1 43767 1cof 143 3.13e+01 1cof d.109.1.2 40860 1bh3 289 3.20e+01 3prn f.4.3.1 43766 1bv8A 138 3.23e+01 1ayoA b.2.4.1 22430 1oroA 213 3.27e+01 1opr c.61.1.1 34093 1lh0A 213 3.45e+01 c.61.1.1 73896 1j5wA 298 3.52e+01 d.104.1.1 71589 1pfzA 380 3.57e+01 1smrA b.50.1.2 26881 1gwmA 153 3.66e+01 b.18.1.19 83348 1k4jA 230 3.66e+01 d.108.1.3 72057 1ystH 260 3.68e+01 6prcH b.41.1.1 25482 f.23.10.1 43511 1i3uA 127 3.70e+01 1gc1H b.1.1.1 61636 1hn0A 1021 3.72e+01 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 1pvl 301 3.79e+01 1pvl f.6.1.1 43819 1jd0A 263 3.82e+01 2cba b.74.1.1 62888 1s7jA 262 3.82e+01 d.21.1.2 -9424 1agi 125 3.86e+01 7rsa d.5.1.1 37303 1n9lA 109 3.88e+01 d.110.3.6 85468 1opr 213 3.90e+01 1opr c.61.1.1 34091 1prn 289 3.96e+01 3prn f.4.3.1 43762 3prn 289 4.00e+01 3prn f.4.3.1 43761