# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ic7H 114 2.83e-01 1f3rB b.1.1.1 62258 1bywA 110 1.27e+00 1bywA d.110.3.6 40912 1b12A 248 1.35e+00 1b12A b.87.1.2 28388 1ep0A 185 1.39e+00 1dzrA b.82.1.1 28080 1oxjA 173 1.44e+00 a.60.1.2 87517 a.118.1.13 87518 1n0xH 230 1.99e+00 b.1.1.1 -2201 b.1.1.2 -2473 1kn9A 249 2.24e+00 b.87.1.2 68699 1uacH 114 2.26e+00 b.1.1.1 -2285 1j1xH 114 2.28e+00 b.1.1.1 77063 1qw9A 502 2.35e+00 b.71.1.2 -4677 c.1.8.3 -5348 1hxmA 229 2.47e+00 1hxmA b.1.1.1 61367 b.1.1.2 61368 1hxmD 242 3.63e+00 b.1.1.1 61373 b.1.1.2 61374 1dn1A 594 3.79e+00 1dn1A e.25.1.1 43357 1i3uA 127 3.88e+00 1gc1H b.1.1.1 61636 1gqpA 221 4.03e+00 b.18.1.9 70372 1miqA 375 4.12e+00 b.50.1.2 79151 1r4xA 275 5.30e+00 unknown_sccs -2846 unknown_sccs -10776 1j1bA 420 5.47e+00 d.144.1.7 -11312 1ystH 260 5.49e+00 6prcH b.41.1.1 25482 f.23.10.1 43511 1oaqH 121 6.09e+00 b.1.1.1 -2287 1vddA 228 6.30e+00 1g5tA 196 6.98e+00 1g5rA c.37.1.11 32366 1qs8A 329 7.30e+00 1smrA b.50.1.2 26887 1g5rA 196 8.06e+00 1g5rA c.37.1.11 32367 1mlcB 218 8.35e+00 1igtB b.1.1.1 20053 b.1.1.2 21095 1i8kB 124 9.29e+00 b.1.1.1 71131 1mjuH 227 9.36e+00 b.1.1.1 -2245 b.1.1.2 -2495 1ol0A 121 9.49e+00 b.1.1.1 -2311 1pzdA 322 9.64e+00 unknown_sccs -2848 unknown_sccs -10778 1k87A 669 1.01e+01 a.176.1.1 77286 c.1.23.2 77287 1a6wH 120 1.02e+01 1mfa b.1.1.1 20253 1dlfH 124 1.11e+01 1igtB b.1.1.1 20383 1gpqA 135 1.17e+01 d.233.1.1 83295 1q0xH 221 1.36e+01 b.1.1.1 -2265 b.1.1.2 -2536 1lmeA 176 1.41e+01 d.167.1.1 84629 1lnrI 134 1.41e+01 1jb0A 755 1.42e+01 1jb0A f.29.1.1 62820 1hcz 252 1.44e+01 1hcz b.2.6.1 22464 b.84.2.2 28250 1c5cH 215 1.72e+01 1igtB b.1.1.1 20475 b.1.1.2 21439 1l3kA 196 1.76e+01 d.58.7.1 73539 d.58.7.1 73540 1p32A 209 1.81e+01 1p32A d.25.1.1 38379 1tbaA 67 1.90e+01 1tbaA a.15.1.1 16380 1fntc 245 1.93e+01 1euvB 86 2.02e+01 1a5r d.15.1.1 37598 1qovH 260 2.03e+01 6prcH b.41.1.1 25464 f.23.10.1 43457 1fjrA 195 2.09e+01 1fjrA b.102.1.1 59855 1e2tA 284 2.10e+01 1e2tA d.3.1.5 37121 2pcfB 250 2.15e+01 1hcz i.4.1.1 45911 1ospH 218 2.17e+01 1igtB b.1.1.1 20117 b.1.1.2 21147 1fbr 93 2.23e+01 1fbr g.27.1.1 44948 g.27.1.1 44949 1vzoA 355 2.24e+01 1v9kA 228 2.32e+01 1ha1 184 2.42e+01 1ha1 d.58.7.1 39147 d.58.7.1 39148 1okcA 297 2.55e+01 unknown_sccs -12339 1ikoP 178 2.56e+01 b.6.1.5 71243 1sra 151 2.57e+01 1sra a.39.1.3 17190 1kcxA 518 2.59e+01 b.92.1.3 -5074 c.1.9.6 -5426 1gy7A 125 2.81e+01 d.17.4.2 70738 1d5mB 192 3.08e+01 1iakB b.1.1.2 21618 d.19.1.1 38192 1g31A 111 3.09e+01 1g31A b.35.1.1 24656 1ogaD 215 3.17e+01 b.1.1.1 86990 b.1.1.2 86991 1nn7A 105 3.26e+01 d.42.1.2 85894 1dqqB 210 3.26e+01 1igtB b.1.1.1 20421 b.1.1.2 21391 1d3bA 75 3.29e+01 1d3bA b.38.1.1 24798 1bqz 77 3.35e+01 1bqz a.2.3.1 15699 1gbg 214 3.45e+01 1axkA b.29.1.2 24171 1uz8B 212 3.50e+01 1q41A 424 3.56e+01 d.144.1.7 -11308 1zid 268 3.60e+01 1eny c.2.1.2 29911 1ef1A 294 3.67e+01 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 1j05B 121 3.68e+01 b.1.1.1 -2251 1mqkH 127 3.73e+01 b.1.1.1 85053 1rzhH 260 3.75e+01 b.41.1.1 -3979 f.23.10.1 -12092 1tdtA 259 3.81e+01 3tdt b.81.1.2 28055 1vi9A 299 3.82e+01 c.72.1.5 -8393 1nubA 229 3.97e+01 1sra a.39.1.3 17191 g.3.11.3 44330 unknown_sccs 44715 1ounA 127 3.98e+01 1ounA d.17.4.2 38090