# List of top-scoring protein chains for T0257.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qxtA 230 3.17e+00 d.22.1.1 -9433 1qy3A 229 3.18e+00 d.22.1.1 -9434 1k87A 669 3.44e+00 a.176.1.1 77286 c.1.23.2 77287 1qyoA 239 4.39e+00 d.22.1.1 -9435 1gfc 59 4.82e+00 1griA b.34.2.1 24537 1gcqA 61 4.89e+00 1ckaA b.34.2.1 60434 1pyaB 229 6.06e+00 1pyaB 1ny9A 143 6.07e+00 a.181.1.1 86401 1mywA 239 7.25e+00 d.22.1.1 79678 1c8pA 102 7.36e+00 1c8pA b.1.2.1 22040 1ohvA 472 7.42e+00 c.67.1.4 -8181 1egjA 101 7.49e+00 1c8pA b.1.2.1 22039 1figH 216 7.91e+00 1igtB b.1.1.1 19923 b.1.1.2 21017 1rmmA 226 8.81e+00 1rmoA 236 8.95e+00 1qw9A 502 9.64e+00 b.71.1.2 -4677 c.1.8.3 -5348 1pz3A 502 9.74e+00 b.71.1.2 -4673 c.1.8.3 -5344 1ojxA 263 9.86e+00 c.1.10.1 -5445 1gflA 238 1.06e+01 1ema d.22.1.1 38341 1qvrA 854 1.12e+01 a.174.1.1 -1934 c.37.1.20 -7256 c.37.1.20 -7257 1hgyA 365 1.17e+01 c.6.1.1 65833 1hgwA 365 1.18e+01 c.6.1.1 65831 1axiB 236 1.20e+01 1axiB b.1.2.1 21997 b.1.2.1 21998 1qk2A 363 1.22e+01 1bvwA c.6.1.1 30659 3cbh 365 1.23e+01 1bvwA c.6.1.1 30665 1qjwA 365 1.24e+01 1bvwA c.6.1.1 30657 1a85A 158 1.26e+01 1hfc d.92.1.11 40355 1i76A 163 1.27e+01 1hfc d.92.1.11 61877 1kbcA 164 1.28e+01 1hfc d.92.1.11 40350 1bzsA 165 1.29e+01 1hfc d.92.1.11 40348 1dn1A 594 1.29e+01 1dn1A e.25.1.1 43357 1mnc 163 1.43e+01 1hfc d.92.1.11 40353 1gqpA 221 1.49e+01 b.18.1.9 70372 1o9uA 350 1.53e+01 d.144.1.7 -11301 1qcrJ 59 1.58e+01 1be3J f.23.14.1 43679 1gy7A 125 1.58e+01 d.17.4.2 70738 1dun 134 1.65e+01 1dun b.85.4.1 28371 1qyfA 228 1.72e+01 d.22.1.1 -9437 1czfA 362 1.90e+01 1czfA b.80.1.3 28031 1ppjJ 62 1.91e+01 1pnuI 132 1.92e+01 i.1.1.1 88206 1nkwI 134 1.92e+01 i.1.1.2 80594 1pbwA 216 1.92e+01 1pbwA a.116.1.1 19103 1s9aA 257 1.94e+01 1b0xA 94 2.02e+01 1b4fA a.60.1.2 17933 1h8fB 350 2.03e+01 d.144.1.7 65734 1ef1A 294 2.04e+01 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 1uv5A 350 2.05e+01 d.144.1.7 -11316 1sghA 297 2.05e+01 1h8fA 352 2.07e+01 d.144.1.7 65733 1bccJ 62 2.15e+01 1be3J f.23.14.1 43703 1e5wA 346 2.23e+01 1ef1A a.11.2.1 59280 b.55.1.5 59281 d.15.1.4 59282 1s96A 219 2.28e+01 c.37.1.1 -6972 1e2tA 284 2.32e+01 1e2tA d.3.1.5 37121 1mqmB 221 2.40e+01 h.3.1.1 -12951 1qyqA 237 2.42e+01 d.22.1.1 -9436 1qs8A 329 2.57e+01 1smrA b.50.1.2 26887 1miqA 375 2.61e+01 b.50.1.2 79151 1b9cA 236 2.67e+01 1ema d.22.1.1 38358 1griA 217 2.70e+01 1griA b.34.2.1 24531 b.34.2.1 24532 d.93.1.1 40473 1rrxA 226 2.71e+01 1r4xA 275 2.73e+01 unknown_sccs -2846 unknown_sccs -10776 1huyA 239 2.80e+01 1ema d.22.1.1 61280 1g0uB 245 2.97e+01 d.153.1.4 41947 1rypC 244 2.98e+01 1rypC d.153.1.4 41934 1kobA 387 3.02e+01 1tkiA d.144.1.7 41640 1n9pA 207 3.10e+01 b.1.18.16 80343 1j8yF 297 3.11e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1ia8A 289 3.12e+01 1ia8A d.144.1.7 62112 1oxjA 173 3.16e+01 a.60.1.2 87517 a.118.1.13 87518 1j8mF 297 3.21e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1hpgA 187 3.26e+01 1qq4A b.47.1.1 25813 1uwyA 426 3.36e+01 b.3.2.1 -2923 c.56.5.1 -7863 1cd8 114 3.42e+01 1cd8 b.1.1.1 19714 1akjD 120 3.46e+01 1cd8 b.1.1.1 19712 1hxmA 229 3.56e+01 1hxmA b.1.1.1 61367 b.1.1.2 61368 1pzdA 322 3.62e+01 unknown_sccs -2848 unknown_sccs -10778 1oxfA 225 3.64e+01 d.22.1.1 -9440 1r4fA 339 3.65e+01 c.70.1.1 -8354 1hozA 339 3.65e+01 c.70.1.1 65898 1kicA 339 3.69e+01 c.70.1.1 72510 3hhrB 203 3.73e+01 1axiB b.1.2.1 22005 b.1.2.1 22006 1jqbA 351 3.73e+01 b.35.1.2 77151 c.2.1.1 77152 3hhrC 205 3.74e+01 1axiB b.1.2.1 22007 b.1.2.1 22008 1hwgB 237 3.76e+01 1axiB b.1.2.1 21999 b.1.2.1 22000 1a22B 238 3.76e+01 1axiB b.1.2.1 22003 b.1.2.1 22004 1pkm 530 3.84e+01 1a49A b.58.1.1 27051 c.1.12.1 29254 c.49.1.1 33108 1gh7A 419 3.93e+01 b.1.2.1 65194 b.1.2.1 65195 b.1.2.1 65196 b.1.2.1 65197