# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1j2gA	319	3.05e-01			
1bywA	110	3.18e+00	1bywA	d.110.3.6	40912
1tc1A	220	3.65e+00	1tc1A	c.61.1.1	34083
1vzoA	355	3.94e+00			
1jssA	224	6.01e+00		d.129.3.2	71844
1vheA	373	6.30e+00		unknown_sccs	-4280
				c.56.5.4	-7890
1d3bA	75	6.42e+00	1d3bA	b.38.1.1	24798
1b12A	248	6.98e+00	1b12A	b.87.1.2	28388
1roaA	122	7.56e+00			
1k5cA	335	9.61e+00		b.80.1.3	72076
1nscA	390	1.13e+01	2qwc	b.68.1.1	27591
1j1tA	233	1.13e+01		unknown_sccs	-3462
1mp4A	292	1.22e+01		c.68.1.6	79376
1j5wA	298	1.35e+01		d.104.1.1	71589
1v6fA	151	1.61e+01			
1pz4A	116	1.80e+01		d.106.1.1	-10780
2ayh	214	1.82e+01	1axkA	b.29.1.2	24172
1ngvA	534	1.83e+01		c.111.1.2	85698
1a2zA	220	1.84e+01	1a2zA	c.56.4.1	33794
1jd0A	263	1.87e+01	2cba	b.74.1.1	62888
1gbg	214	1.95e+01	1axkA	b.29.1.2	24171
1e79G	272	2.01e+01	1e79G	c.49.2.1	33158
1f8eA	388	2.01e+01	2qwc	b.68.1.1	59694
1nr0A	611	2.23e+01		b.69.4.1	86078
				b.69.4.1	86079
1uhvA	500	2.33e+01		b.71.1.2	-4683
				c.1.8.3	-5354
1ln1A	214	2.34e+01		d.129.3.2	74038
1snzA	344	2.59e+01		b.30.5.4	-3496
1s14A	194	2.87e+01		d.122.1.2	-10973
1ia8A	289	2.98e+01	1ia8A	d.144.1.7	62112
1naqA	112	3.67e+01		d.58.5.2	-9984
1a8e	329	3.72e+01	1cb6A	c.94.1.2	35888
1r2zA	274	3.74e+01		a.156.1.2	-370
				b.113.1.1	-5094
				g.39.1.8	-12748
1l1zA	274	3.79e+01		a.156.1.2	75911
				b.113.1.1	75912
				g.39.1.8	75913
1ryoA	327	3.93e+01		c.94.1.2	-8708