# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j2gA 319 4.28e-01 1vzoA 355 2.22e+00 2ayh 214 2.89e+00 1axkA b.29.1.2 24172 1gbg 214 3.75e+00 1axkA b.29.1.2 24171 1d3bA 75 3.82e+00 1d3bA b.38.1.1 24798 1pz4A 116 4.98e+00 d.106.1.1 -10780 1dynA 125 5.78e+00 1dynA b.55.1.1 26955 1k8kC 372 6.21e+00 b.69.4.1 68308 1j5wA 298 8.95e+00 d.104.1.1 71589 1s14A 194 1.09e+01 d.122.1.2 -10973 2mprA 421 1.11e+01 2mprA f.4.3.2 43788 1pfzA 380 1.12e+01 1smrA b.50.1.2 26881 1phm 310 1.18e+01 1phm b.121.1.2 59015 b.121.1.2 59016 1on0A 158 1.20e+01 d.108.1.1 87095 1ivg 388 1.33e+01 2qwc b.68.1.1 27578 1bywA 110 1.33e+01 1bywA d.110.3.6 40912 1ca1 370 1.34e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1jeyA 609 1.40e+01 1jeqA unknown_sccs -4426 unknown_sccs -7990 1sdwA 314 1.48e+01 b.121.1.2 -3024 b.121.1.2 -3025 1nr0A 611 1.53e+01 b.69.4.1 86078 b.69.4.1 86079 1roaA 122 1.54e+01 1n9pA 207 1.65e+01 b.1.18.16 80343 1grj 158 1.66e+01 1grj a.2.1.1 15691 d.26.1.2 38433 1rypH 205 1.66e+01 d.153.1.4 41876 1j1tA 233 1.66e+01 unknown_sccs -3462 1lf2A 331 1.79e+01 b.50.1.2 77914 1mm4A 170 1.84e+01 f.4.1.2 79294 1s5aA 150 1.88e+01 unknown_sccs -9300 1j1yA 136 2.03e+01 d.38.1.5 -9671 1h4rA 314 2.13e+01 a.11.2.1 65616 b.55.1.5 65617 d.15.1.4 65618 1r2zA 274 2.17e+01 a.156.1.2 -370 b.113.1.1 -5094 g.39.1.8 -12748 1l1zA 274 2.18e+01 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1hn0A 1021 2.21e+01 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 1ryp2 233 2.23e+01 1ryp2 1ui8A 638 2.30e+01 b.30.2.1 -3525 d.17.2.1 -9272 d.17.2.1 -9273 1ui7A 638 2.32e+01 b.30.2.1 -3523 d.17.2.1 -9268 d.17.2.1 -9269 1f8eA 388 2.32e+01 2qwc b.68.1.1 59694 1smvA 260 2.34e+01 1smvA b.121.4.7 23288 1qhoA 686 2.53e+01 1cxlA b.1.18.2 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 1iqyA 638 2.55e+01 b.30.2.1 76763 d.17.2.1 76764 d.17.2.1 76765 1gcyA 527 2.57e+01 1jdc b.71.1.1 27788 c.1.8.1 28775 1qw9A 502 2.66e+01 b.71.1.2 -4677 c.1.8.3 -5348 1uacH 114 2.84e+01 b.1.1.1 -2285 1dypA 271 2.96e+01 1dypA b.29.1.2 24185 1avk 638 3.10e+01 1a2vA b.30.2.1 24410 d.17.2.1 38047 d.17.2.1 38048 1khiA 176 3.13e+01 b.34.5.2 77408 b.40.4.5 77409 1iscA 192 3.14e+01 1avmA a.2.11.1 15733 d.44.1.1 38726 1cc1L 498 3.17e+01 1h2rL e.18.1.1 43301 1m7vA 363 3.18e+01 d.174.1.1 78748 1j1xH 114 3.22e+01 b.1.1.1 77063 1nscA 390 3.37e+01 2qwc b.68.1.1 27591 1q9uA 130 3.50e+01 unknown_sccs -11025 1e5kA 201 3.57e+01 1fr9A c.68.1.8 34578 2stv 195 3.86e+01 2stv b.121.7.1 23287 1jd0A 263 3.87e+01 2cba b.74.1.1 62888 1bo1A 416 3.92e+01 1bo1A d.143.1.2 41591 1l1oC 181 3.92e+01 b.40.4.3 73480 1ryoA 327 3.94e+01 c.94.1.2 -8708 1ou8A 111 3.94e+01 unknown_sccs -3799