# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1bywA	110	1.00e+00	1bywA	d.110.3.6	40912
1gy7A	125	1.52e+00		d.17.4.2	70738
1ep0A	185	1.63e+00	1dzrA	b.82.1.1	28080
1d3bA	75	2.62e+00	1d3bA	b.38.1.1	24798
1ogaD	215	4.02e+00		b.1.1.1	86990
				b.1.1.2	86991
1uacH	114	4.92e+00		b.1.1.1	-2285
1h6uA	308	5.64e+00		b.1.18.15	65688
				c.10.2.1	65689
1j1xH	114	7.94e+00		b.1.1.1	77063
1f7dA	136	8.69e+00	1dun	b.85.4.1	28353
1m7vA	363	1.03e+01		d.174.1.1	78748
1dun	134	1.35e+01	1dun	b.85.4.1	28371
1n0xH	230	1.35e+01		b.1.1.1	-2201
				b.1.1.2	-2473
1jmcA	246	1.53e+01	1jmcA	b.40.4.3	25300
				b.40.4.3	25301
1i76A	163	1.65e+01	1hfc	d.92.1.11	61877
1czfA	362	1.68e+01	1czfA	b.80.1.3	28031
1pz4A	116	1.82e+01		d.106.1.1	-10780
1grj	158	1.87e+01	1grj	a.2.1.1	15691
				d.26.1.2	38433
1mp9A	198	2.03e+01		a.74.1.2	-1127
				a.74.1.2	-1128
1g6oA	330	2.10e+01	1g6oA	c.37.1.11	32430
1ieaA	192	2.35e+01	1iakA	b.1.1.2	21631
				d.19.1.1	38205
1oz9A	150	2.52e+01		unknown_sccs	-10588
1n9lA	109	2.66e+01		d.110.3.6	85468
1vavA	222	2.67e+01			
1s9aA	257	2.95e+01			
1gbg	214	2.99e+01	1axkA	b.29.1.2	24171
1i8kB	124	2.99e+01		b.1.1.1	71131
1fthA	122	3.11e+01		d.150.1.2	60028
1ema	236	3.34e+01	1ema	d.22.1.1	38339
1j2gA	319	3.39e+01			
1fpoA	171	3.50e+01	1fpoA	a.2.3.1	15693
				a.23.1.1	16487
1nziA	159	3.56e+01		b.23.1.1	86449
				g.3.11.1	86450
1pgvA	197	3.74e+01		c.10.1.1	88073
1r4xA	275	3.90e+01		unknown_sccs	-2846
				unknown_sccs	-10776
1oxjA	173	3.92e+01		a.60.1.2	87517
				a.118.1.13	87518
1gqiA	708	3.95e+01		c.1.8.10	76279
				d.92.2.2	76280